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The map label for this gene is oruR [H]

Identifier: 119385635

GI number: 119385635

Start: 73096

End: 74118

Strand: Direct

Name: oruR [H]

Synonym: Pden_2910

Alternate gene names: 119385635

Gene position: 73096-74118 (Clockwise)

Preceding gene: 119385609

Following gene: 119385639

Centisome position: 4.22

GC content: 73.31

Gene sequence:

>1023_bases
ATGGAACGCCGCACCATCTCCCCCGGCTTCGTCGAGGACGCGCTGGACTGCCTTCACCGCCGCGGCATCGACCCGGCGCC
GCTCCTGGCCCATGCCGGCATCGCGGCCCTGGGCGAGCCGGTCTCGAACCTGCAATACGGCAAGCTCTGGCTCGCCATCG
CCGACCTGATCCGCGACGAGTTCTTCGACGAGGCCGCCCGCCCCATGCGCCCCGGCAGCTTCCAGCTGCTCTGCCACGCG
GTCCTGCATGCCGGCACGCTGGAGCGCGCCCTGCGCCGGGCGCTGCTGTTCCTGTCCGTCACCCTGGACGACCCGACCGG
AGAGCTGCGCCTGCGCGACGGCCAGGCCGAGATCGTGCTCGCCGACGCCGGCCCGCCGCGCCGCGCCTTCGCCTATCGCA
CCTACTGGCTGGTCCTGCTGGGGGTGATGTGCTGGCTGATCGGCCGCCGCATCCCGCTGATGCAGGTCGATTTCGCCTGC
CCCGCACCGGAAAACCGCCGCGACTACCACCAGTTCTTCGGCGCCCCGGTGCATTTCGACCAGCCGGCCAGCCGCCTGAC
CTTTGCCGCCAGCTACCTGTCCCTGCCGACCATCCGCAGCGAAAAGGCGCTTCAGGGCTTCCTGCGCGGCGCGCCCGCCA
ACATTCTTCTGCGCTATCGCCACGACCAGGGGCTGTCGGCGCGCATCCGCGCCCGGCTGCGCGCCGCCCCGCCCGAGGAC
TGGCCCGATTTCGACCGCCTCGCCGCCGACCTGCGCCTGTCGCCCGCCACGCTGCGCCGCCGCCTGCGGGCCGAGGGCCA
GGGCTTCGCCGCCATCCGCGCCGAGATCCGGTTGATGCGCGCCCGCCAGCTTCTGCGCGACACCGACCTCAGCGTGGCCG
AGATCGCCGCCCGCCTCGGCTATGGCGAACCCAGCGCCTTCCACCGCGCCTTCCTCAAGATCGCCGGCACCACGCCCGCC
GCGTTTCGCCGCGCGGCGCTCAGCCCGCCGCCATCCACAGCCGGAACCGCCGCCCGCCGGTGA

Upstream 100 bases:

>100_bases
CGCGGGCTCCACGAGTTCGGCGGCAGCTTAGCGCCGACCGCATTGCAAACAATGACATTCGCGGCCAGAATATCTGATCG
GTTTTGCAATAACGGGCGCC

Downstream 100 bases:

>100_bases
TCTCGCGCGCCAGCCCCAGCGCCTTCATCCGCGACAGCATCCGCTCGGCAGTGTCGCGGCTGATGCCGGCGCTGTCCTCC
AGCATCGCCGCGCTCAGCAG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MERRTISPGFVEDALDCLHRRGIDPAPLLAHAGIAALGEPVSNLQYGKLWLAIADLIRDEFFDEAARPMRPGSFQLLCHA
VLHAGTLERALRRALLFLSVTLDDPTGELRLRDGQAEIVLADAGPPRRAFAYRTYWLVLLGVMCWLIGRRIPLMQVDFAC
PAPENRRDYHQFFGAPVHFDQPASRLTFAASYLSLPTIRSEKALQGFLRGAPANILLRYRHDQGLSARIRARLRAAPPED
WPDFDRLAADLRLSPATLRRRLRAEGQGFAAIRAEIRLMRARQLLRDTDLSVAEIAARLGYGEPSAFHRAFLKIAGTTPA
AFRRAALSPPPSTAGTAARR

Sequences:

>Translated_340_residues
MERRTISPGFVEDALDCLHRRGIDPAPLLAHAGIAALGEPVSNLQYGKLWLAIADLIRDEFFDEAARPMRPGSFQLLCHA
VLHAGTLERALRRALLFLSVTLDDPTGELRLRDGQAEIVLADAGPPRRAFAYRTYWLVLLGVMCWLIGRRIPLMQVDFAC
PAPENRRDYHQFFGAPVHFDQPASRLTFAASYLSLPTIRSEKALQGFLRGAPANILLRYRHDQGLSARIRARLRAAPPED
WPDFDRLAADLRLSPATLRRRLRAEGQGFAAIRAEIRLMRARQLLRDTDLSVAEIAARLGYGEPSAFHRAFLKIAGTTPA
AFRRAALSPPPSTAGTAARR
>Mature_340_residues
MERRTISPGFVEDALDCLHRRGIDPAPLLAHAGIAALGEPVSNLQYGKLWLAIADLIRDEFFDEAARPMRPGSFQLLCHA
VLHAGTLERALRRALLFLSVTLDDPTGELRLRDGQAEIVLADAGPPRRAFAYRTYWLVLLGVMCWLIGRRIPLMQVDFAC
PAPENRRDYHQFFGAPVHFDQPASRLTFAASYLSLPTIRSEKALQGFLRGAPANILLRYRHDQGLSARIRARLRAAPPED
WPDFDRLAADLRLSPATLRRRLRAEGQGFAAIRAEIRLMRARQLLRDTDLSVAEIAARLGYGEPSAFHRAFLKIAGTTPA
AFRRAALSPPPSTAGTAARR

Specific function: Probably activates the ArgJ gene that encodes ornithine acetyltransferase. Binds to its own promoter-operator region. Probably binds ornithine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37839; Mature: 37839

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERRTISPGFVEDALDCLHRRGIDPAPLLAHAGIAALGEPVSNLQYGKLWLAIADLIRDE
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCHHHHHHHHHHHHHHHH
FFDEAARPMRPGSFQLLCHAVLHAGTLERALRRALLFLSVTLDDPTGELRLRDGQAEIVL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCEEEEE
ADAGPPRRAFAYRTYWLVLLGVMCWLIGRRIPLMQVDFACPAPENRRDYHQFFGAPVHFD
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCC
QPASRLTFAASYLSLPTIRSEKALQGFLRGAPANILLRYRHDQGLSARIRARLRAAPPED
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHCCCCCC
WPDFDRLAADLRLSPATLRRRLRAEGQGFAAIRAEIRLMRARQLLRDTDLSVAEIAARLG
CCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YGEPSAFHRAFLKIAGTTPAAFRRAALSPPPSTAGTAARR
CCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MERRTISPGFVEDALDCLHRRGIDPAPLLAHAGIAALGEPVSNLQYGKLWLAIADLIRDE
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCHHHHHHHHHHHHHHHH
FFDEAARPMRPGSFQLLCHAVLHAGTLERALRRALLFLSVTLDDPTGELRLRDGQAEIVL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCEEEEE
ADAGPPRRAFAYRTYWLVLLGVMCWLIGRRIPLMQVDFACPAPENRRDYHQFFGAPVHFD
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCC
QPASRLTFAASYLSLPTIRSEKALQGFLRGAPANILLRYRHDQGLSARIRARLRAAPPED
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHCCCCCC
WPDFDRLAADLRLSPATLRRRLRAEGQGFAAIRAEIRLMRARQLLRDTDLSVAEIAARLG
CCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YGEPSAFHRAFLKIAGTTPAAFRRAALSPPPSTAGTAARR
CCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9401045; 10984043 [H]