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The map label for this gene is recO

Identifier: 119385562

GI number: 119385562

Start: 5907

End: 6635

Strand: Direct

Name: recO

Synonym: Pden_2837

Alternate gene names: 119385562

Gene position: 5907-6635 (Clockwise)

Preceding gene: 119385560

Following gene: 119385566

Centisome position: 0.34

GC content: 72.98

Gene sequence:

>729_bases
ATGGAATGGAGCGGCGAGGCCAGCGTGATGGCATTGCAAAGGCACGGGGAAAGCGCCGTGATCCTGACCGTGCTGTCGCG
CGAGACGGGGCTGATCCGCGGCCTGGTGCCCGGCGGCGCCAGCGCCAAGCGCGCCGCGATGCTGCAACCCGGCAACCGGG
TCAGCCTGCGCTGGCGGGCGCGGCTGGAGGAGCAGCTGGGCACCTTCGCGGTCGAGCCGGCGCGGGCGCGGCCGGGGCTT
CTGGGCAGCGGCGATGCGCTGGCCGGAGTGAATGCGGTCACTGCGCTTTTGACCTTTGCCCTGCCCGAACGCGACCCGCA
TCCCCGCCTGGCCGACGCGACCGAGGCGCTGCTGGACCTGATGGACGCGGGCGAGGGTTGGGCCGAGGCCTATCTGCATT
GGGAAATGCGGCTGCTCGACGAGCTGGGCTTCGGCCTTGATCTGACGAGTTGCGCGGTGACGGGGGCGCGCGAGGGGCTG
GCCTATGTCAGCCCACGCTCGGGCCGGGCGGTTTCGGCCCAGGCGGCGGGGGAATGGGCGCCAAGGCTCTTGCCGCTGCC
CGCCATGCTGGGCGGGCGCGGCAATGGCGGCATCGAGGACGCGCTGGCCCTGACTGGCCATTTCCTGCAGGTGCGGCTGG
CCGAGGCGCATGCGGGCAAACCCCTGCCCCCGGCCCGCGCGCGGCTGGTCGCCCGGCTTACTGCGTCGCGGCACGCCAGC
GGATGGTGA

Upstream 100 bases:

>100_bases
CCAGCCGGGCCTGGGCCTCGATCCACGGTTTCAACATGCCTGTCTCCTTGTTCATTGCCCCCAGATTGCGGCAGGGTGGC
GCGAAAGGAAAGGCGGCGCG

Downstream 100 bases:

>100_bases
CATCGGGGCCGGTCATCACCAGCTCGTCACCTTCGCGCCTTGCCTCGCGCACCGCGCCGAGCGCCTGGAAAAAGGCGTGC
TCGCCGCCCTCTTGCAGGCA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRARLEEQLGTFAVEPARARPGL
LGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDLMDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGL
AYVSPRSGRAVSAQAAGEWAPRLLPLPAMLGGRGNGGIEDALALTGHFLQVRLAEAHAGKPLPPARARLVARLTASRHAS
GW

Sequences:

>Translated_242_residues
MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRARLEEQLGTFAVEPARARPGL
LGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDLMDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGL
AYVSPRSGRAVSAQAAGEWAPRLLPLPAMLGGRGNGGIEDALALTGHFLQVRLAEAHAGKPLPPARARLVARLTASRHAS
GW
>Mature_242_residues
MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRARLEEQLGTFAVEPARARPGL
LGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDLMDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGL
AYVSPRSGRAVSAQAAGEWAPRLLPLPAMLGGRGNGGIEDALALTGHFLQVRLAEAHAGKPLPPARARLVARLTASRHAS
GW

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_PARDP (A1B5X7)

Other databases:

- EMBL:   CP000490
- RefSeq:   YP_916617.1
- ProteinModelPortal:   A1B5X7
- STRING:   A1B5X7
- GeneID:   4581404
- GenomeReviews:   CP000490_GR
- KEGG:   pde:Pden_2837
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 25541; Mature: 25541

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRA
CCCCCCHHEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHEECCCCEEEEHHHH
RLEEQLGTFAVEPARARPGLLGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDL
HHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGLAYVSPRSGRAVSAQAAGEWA
HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCC
PRLLPLPAMLGGRGNGGIEDALALTGHFLQVRLAEAHAGKPLPPARARLVARLTASRHAS
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHEEEEEHHCCCCCCCHHHHHHHHHHHHHHCCC
GW
CC
>Mature Secondary Structure
MEWSGEASVMALQRHGESAVILTVLSRETGLIRGLVPGGASAKRAAMLQPGNRVSLRWRA
CCCCCCHHEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHEECCCCEEEEHHHH
RLEEQLGTFAVEPARARPGLLGSGDALAGVNAVTALLTFALPERDPHPRLADATEALLDL
HHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MDAGEGWAEAYLHWEMRLLDELGFGLDLTSCAVTGAREGLAYVSPRSGRAVSAQAAGEWA
HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCC
PRLLPLPAMLGGRGNGGIEDALALTGHFLQVRLAEAHAGKPLPPARARLVARLTASRHAS
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHEEEEEHHCCCCCCCHHHHHHHHHHHHHHCCC
GW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA