| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is pgk
Identifier: 119358498
GI number: 119358498
Start: 3125165
End: 3126358
Strand: Direct
Name: pgk
Synonym: Cpha266_2734
Alternate gene names: 119358498
Gene position: 3125165-3126358 (Clockwise)
Preceding gene: 119358497
Following gene: 119358499
Centisome position: 99.72
GC content: 50.92
Gene sequence:
>1194_bases ATGCAGAAAAAGACCTTGTCTGACGTAGCAATCCAAGGCAAACGGGTATTAATGCGCGTCGATTTTAATGTCCCTATCGA TGAAGAAAAAAATATCACCGATGACAAAAGAATCGTTGAGGCCCTTCCTTCCATAAAAAAAATCATCGACGGGGGTGGGC GCCTGATTCTCATGTCCCATCTGGGCAGGCCAAAAGGAAAGGTGAATGCCGAGTTTTCGCTTGCTCCTGTTGCGCACAGA CTTTCGGAACTTCTTGATACTCCCGTTGCCATGGCTAAAGACTGCATCGGCACGGAAGTCATGCAGGCGGCTCTCGCTCT TCAGGACGGCGAAGTGATGCTTCTTGAAAATCTCAGATTTCACGCCGAAGAGGAGGCCAACAACCCGGATTTCGCAAAAG AGCTTGCTTCGCTTGGAGAGATTTTTGTGAACGATGCGTTTGGAACTGCCCACAGAGCCCATGCGTCGACAGAGGGAATT ACCCATTATGTCCCCGTAGCGGTTGCCGGCTATCTTATCGAAAAGGAACTGAACTATCTTGGGAAAGCTCTTGACAACCC CGAAAGACCTTTTGTGGCAATTCTCGGCGGATCGAAAATATCCGGCAAGATCGATGTGCTTGAAAATCTCTTTACAAAAG TCGATACGGTGCTCATAGGCGGAGCCATGGTGTTTACCTTTTTCAAGGCTCAGGGGCTCAATGTCGGAAACTCCCTGGTT GAAGACAACAAACTCGACCTTGCTCAGGCGCTGCTCAAACAGGCCGCCGATAAGGGAATCAACCTCCTTCTTCCGGACGA TGTTCTGGTGGCTGCGACTATTTCTTCCGACGCGTCTTCGCATGTTGAGGCGGTCAACAGCATGAGCGACGGGATGATCG GTGTTGATATCGGCCCGAAAACCATCGAAAAATACCGGAATGAAATTCTTGCCGCCCGCACCGTGCTGTGGAACGGTCCT ATGGGAGTTTTTGAAATCGACAACTTTGCCGAGGGAACATTCGCCATTGCGAAAGCTCTTGCCGAAGCGACCTCCTCCGG GGCAATAACCATTGTGGGGGGGGGCGATTCTGCTGCCGCTATCGCTAAAGCAGCGCTTTCGGACTCTATCACCCATATTT CAACGGGCGGAGGAGCGAGTCTTGAATTTCTCGAGGGGAAAGCGCTTCCCGGAATCGAAGCACTGAACGATTAA
Upstream 100 bases:
>100_bases TCCTTGAGGAATAGCTCAACGGGGTGTAAGCCGTTCCTTGAAATAATTTATATTATCACCATATACATAAACGATTTTCT CTAACTAACCTTACGTTACA
Downstream 100 bases:
>100_bases AGAGTACCGAGGATTATGGGTATGTCTACAGAAAAGATCGATTACTCCCTTTACGCTTTCGGGATGCCAGAGAGCCGCAA AGTAACAACGGACAATGAAC
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MQKKTLSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSHLGRPKGKVNAEFSLAPVAHR LSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRFHAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGI THYVPVAVAGYLIEKELNYLGKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLV EDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPKTIEKYRNEILAARTVLWNGP MGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPGIEALND
Sequences:
>Translated_397_residues MQKKTLSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSHLGRPKGKVNAEFSLAPVAHR LSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRFHAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGI THYVPVAVAGYLIEKELNYLGKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLV EDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPKTIEKYRNEILAARTVLWNGP MGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPGIEALND >Mature_397_residues MQKKTLSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSHLGRPKGKVNAEFSLAPVAHR LSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRFHAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGI THYVPVAVAGYLIEKELNYLGKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLV EDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPKTIEKYRNEILAARTVLWNGP MGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPGIEALND
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family
Homologues:
Organism=Homo sapiens, GI4505763, Length=415, Percent_Identity=44.8192771084337, Blast_Score=355, Evalue=3e-98, Organism=Homo sapiens, GI31543397, Length=415, Percent_Identity=43.855421686747, Blast_Score=351, Evalue=6e-97, Organism=Escherichia coli, GI1789294, Length=394, Percent_Identity=43.4010152284264, Blast_Score=301, Evalue=4e-83, Organism=Caenorhabditis elegans, GI17508823, Length=414, Percent_Identity=45.4106280193237, Blast_Score=363, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6319857, Length=412, Percent_Identity=43.9320388349515, Blast_Score=345, Evalue=5e-96, Organism=Drosophila melanogaster, GI24581203, Length=416, Percent_Identity=45.4326923076923, Blast_Score=352, Evalue=3e-97, Organism=Drosophila melanogaster, GI17136394, Length=413, Percent_Identity=44.3099273607748, Blast_Score=330, Evalue=7e-91,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): PGK_CHLPD (A1BJZ1)
Other databases:
- EMBL: CP000492 - RefSeq: YP_913142.1 - ProteinModelPortal: A1BJZ1 - SMR: A1BJZ1 - STRING: A1BJZ1 - GeneID: 4569978 - GenomeReviews: CP000492_GR - KEGG: cph:Cpha266_2734 - NMPDR: fig|290317.7.peg.2855 - eggNOG: COG0126 - HOGENOM: HBG453500 - OMA: LSYFSKA - ProtClustDB: PRK00073 - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_00145 - InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 - Gene3D: G3DSA:3.40.50.1270 - Gene3D: G3DSA:3.40.50.1260 - PANTHER: PTHR11406 - PIRSF: PIRSF000724 - PRINTS: PR00477
Pfam domain/function: PF00162 PGK; SSF53748 PGK
EC number: =2.7.2.3
Molecular weight: Translated: 42001; Mature: 42001
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: BINDING 37-37 BINDING 119-119 BINDING 152-152 BINDING 203-203 BINDING 294-294 BINDING 325-325
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKKTLSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSH CCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC LGRPKGKVNAEFSLAPVAHRLSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRF CCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH HAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGITHYVPVAVAGYLIEKELNYL HCHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH GKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLV HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH EDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPK CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCHH TIEKYRNEILAARTVLWNGPMGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAA HHHHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHH IAKAALSDSITHISTGGGASLEFLEGKALPGIEALND HHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MQKKTLSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSH CCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC LGRPKGKVNAEFSLAPVAHRLSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRF CCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH HAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGITHYVPVAVAGYLIEKELNYL HCHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH GKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLV HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH EDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPK CCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCHH TIEKYRNEILAARTVLWNGPMGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAA HHHHHHHHHHHHHHHEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHH IAKAALSDSITHISTGGGASLEFLEGKALPGIEALND HHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA