Click here to switch to the map view.

The map label for this gene is yfcH [C]

Identifier: 119358439

GI number: 119358439

Start: 3067379

End: 3068320

Strand: Reverse

Name: yfcH [C]

Synonym: Cpha266_2675

Alternate gene names: 119358439

Gene position: 3068320-3067379 (Counterclockwise)

Preceding gene: 119358440

Following gene: 119358438

Centisome position: 97.91

GC content: 55.31

Gene sequence:

>942_bases
ATGCAGGGACATATTGTCATTACAGGAGCAACAGGAGTTATCGGCGCGGCAGTTGCCGCCGCTCTCATACGTGAAGGTTA
TGACGTGGTTATTCTTGCCCGCTCAACGCAGGCCGCAGCCGAAAAGATTCCCGGAGCAGCGAACTATCTCGCCTGGGATG
CCGACAAGGCTGACGGAGAGTGGGTCGCAAGCATCGAGGGAGCAAAAGCCGTCATTCATCTGGCAGGCAAGCCCCTCCTT
GAAAGCCGCTGGACCGAAGAACACAAAAAAGCATGCTATGACTCAAGAATAAACGGCACCCGCCACATGGTTGCCGCTAT
TGCGGGAGCGAAGAAAAAACCGGAAATCTTTCTTTCAGCCTCGGCAATCGGCTATTACGGCTCGTTCGAAAGCTGCGGCG
ATACCCCCGAAATCACAGAGAACGGCGCCGAAGGCCGCGACTTTCTTGCCCGAATCTGTATCGACTGGGAAAAAGAGGCC
GATCCGGCAAAGATGCCCGGGGTTCGCGTCGTCCTGTTAAGAACAGGCATCGTGCTGACAACGCAAGGCGGCATGCTGCA
GAAAATGATGACGCCCTTCAACTTCTTTCTCGGCGGACCCATCGGATCCGGCAATCAATGTATCTCCTGGATTCATATCG
ACGATGAGATACAGGCAATACGGGAACTTCTCCTGAACCCCGCCTACCAGGGCGCCGTCAATCTCGTCGGCCCCAAACCG
GTTTCCATGAAAGAGTTTGCCGTCGAACTCGGATCGGTGATGCAGAGGCCCTCGCTCTTTGCTGTACCGAAACTCGCCGT
GCAACTGCTGCTTGGAGAGGGAGCGGAATACGCGGTAAAAGGGCAGCGGGTCATTCCGGCAAAGCTTGTCGAAAACGGCT
TTGTTTTCTCCTCGCCACGGCTTTTCGACGCACTGATGGAGCTGGTATCCGGCAAAAAATAG

Upstream 100 bases:

>100_bases
CCTCCCTGACTTGTCGCGACCAATCCGCCAATCCGGTATCGGGACAAACGAACAGAGGCGCACAGAAAAGAGCGGCCACA
ATACTAAAACGGAACATGCC

Downstream 100 bases:

>100_bases
GCATGCCGGCTATTCCTCGCCCCCCGGTTCTTCGAGATGCTGACGACGGCGTTCCCGACCGTTCTGCAAACTCCGGGAAC
AAATGAACATCGATATTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQGHIVITGATGVIGAAVAAALIREGYDVVILARSTQAAAEKIPGAANYLAWDADKADGEWVASIEGAKAVIHLAGKPLL
ESRWTEEHKKACYDSRINGTRHMVAAIAGAKKKPEIFLSASAIGYYGSFESCGDTPEITENGAEGRDFLARICIDWEKEA
DPAKMPGVRVVLLRTGIVLTTQGGMLQKMMTPFNFFLGGPIGSGNQCISWIHIDDEIQAIRELLLNPAYQGAVNLVGPKP
VSMKEFAVELGSVMQRPSLFAVPKLAVQLLLGEGAEYAVKGQRVIPAKLVENGFVFSSPRLFDALMELVSGKK

Sequences:

>Translated_313_residues
MQGHIVITGATGVIGAAVAAALIREGYDVVILARSTQAAAEKIPGAANYLAWDADKADGEWVASIEGAKAVIHLAGKPLL
ESRWTEEHKKACYDSRINGTRHMVAAIAGAKKKPEIFLSASAIGYYGSFESCGDTPEITENGAEGRDFLARICIDWEKEA
DPAKMPGVRVVLLRTGIVLTTQGGMLQKMMTPFNFFLGGPIGSGNQCISWIHIDDEIQAIRELLLNPAYQGAVNLVGPKP
VSMKEFAVELGSVMQRPSLFAVPKLAVQLLLGEGAEYAVKGQRVIPAKLVENGFVFSSPRLFDALMELVSGKK
>Mature_313_residues
MQGHIVITGATGVIGAAVAAALIREGYDVVILARSTQAAAEKIPGAANYLAWDADKADGEWVASIEGAKAVIHLAGKPLL
ESRWTEEHKKACYDSRINGTRHMVAAIAGAKKKPEIFLSASAIGYYGSFESCGDTPEITENGAEGRDFLARICIDWEKEA
DPAKMPGVRVVLLRTGIVLTTQGGMLQKMMTPFNFFLGGPIGSGNQCISWIHIDDEIQAIRELLLNPAYQGAVNLVGPKP
VSMKEFAVELGSVMQRPSLFAVPKLAVQLLLGEGAEYAVKGQRVIPAKLVENGFVFSSPRLFDALMELVSGKK

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=312, Percent_Identity=31.7307692307692, Blast_Score=145, Evalue=6e-35,
Organism=Escherichia coli, GI1788642, Length=306, Percent_Identity=38.562091503268, Blast_Score=211, Evalue=6e-56,
Organism=Drosophila melanogaster, GI28573846, Length=315, Percent_Identity=32.6984126984127, Blast_Score=168, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33539; Mature: 33539

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGHIVITGATGVIGAAVAAALIREGYDVVILARSTQAAAEKIPGAANYLAWDADKADGE
CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCC
WVASIEGAKAVIHLAGKPLLESRWTEEHKKACYDSRINGTRHMVAAIAGAKKKPEIFLSA
EEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEE
SAIGYYGSFESCGDTPEITENGAEGRDFLARICIDWEKEADPAKMPGVRVVLLRTGIVLT
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEE
TQGGMLQKMMTPFNFFLGGPIGSGNQCISWIHIDDEIQAIRELLLNPAYQGAVNLVGPKP
ECCCHHHHHHCCHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEECCCCC
VSMKEFAVELGSVMQRPSLFAVPKLAVQLLLGEGAEYAVKGQRVIPAKLVENGFVFSSPR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCEECHHHHHCCCCEECCCH
LFDALMELVSGKK
HHHHHHHHHCCCC
>Mature Secondary Structure
MQGHIVITGATGVIGAAVAAALIREGYDVVILARSTQAAAEKIPGAANYLAWDADKADGE
CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCC
WVASIEGAKAVIHLAGKPLLESRWTEEHKKACYDSRINGTRHMVAAIAGAKKKPEIFLSA
EEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEE
SAIGYYGSFESCGDTPEITENGAEGRDFLARICIDWEKEADPAKMPGVRVVLLRTGIVLT
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEE
TQGGMLQKMMTPFNFFLGGPIGSGNQCISWIHIDDEIQAIRELLLNPAYQGAVNLVGPKP
ECCCHHHHHHCCHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEECCCCC
VSMKEFAVELGSVMQRPSLFAVPKLAVQLLLGEGAEYAVKGQRVIPAKLVENGFVFSSPR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCEECHHHHHCCCCEECCCH
LFDALMELVSGKK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]