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The map label for this gene is rfaH [C]

Identifier: 119358362

GI number: 119358362

Start: 2972210

End: 2972752

Strand: Reverse

Name: rfaH [C]

Synonym: Cpha266_2594

Alternate gene names: 119358362

Gene position: 2972752-2972210 (Counterclockwise)

Preceding gene: 119358363

Following gene: 119358361

Centisome position: 94.86

GC content: 46.96

Gene sequence:

>543_bases
ATGGGCGATGTGGAGTGTGTTCATTGGTATGCCGTTTATGTTCGGTCAAGGCATGAGAAGAAGGTTCATCAGCTGTTTCT
TGAAAAGGAGTTGACGAGTTTTCTGCCGTTGCTTGAAACGATGAGGCAGTGGAGCGATAGAAAGAAAAAGGTCTATGAGC
CTTTGTTCAGGGGGTATGTGTTTGTCAATATCGCTATGAGGAGGGATCATATTCGTGTGCTTGATACGGATGGGGTTATC
AAGTTTATAGGTATCGGTAAAAAACCTTCGGTGATCGGTTGTCGGGATATTGAGTGGCTTAAGACGCTTGTCAGGGAGTC
GGATAGCATCCATCAGACGGTTGATGCGCTTCCTCCTGGTCAGCTTGTGCGGGTTCTTGCCGGTCCATTCAAGGATTTTG
AGGGGGTTGTGTTGAAGGGGGGCAGGGAGTCAAGGCTTGTTGTGTTTTTTGATAGTATCATGCAAGGTGTTGAGATCAGT
ATTTTTCCTGAACTGCTCGTGCCGATTGCCAGAAGATCGACCGAATCATCCGATGTTTTGTGA

Upstream 100 bases:

>100_bases
GGGTGGGGAGGTGGTTTTTTGAAAATTGGTTTAGAGTTGTTAGTATTGTTTTTTGTTTGACCCTTTGTGTTTTTTTAAGG
TCGATAATTTTTGTTGTTGT

Downstream 100 bases:

>100_bases
TGGTTTTATGCGCTGCAATGACTATGCATGGAGGATTGATTTTTTTATTTTTTGCTTTTTCGGGGGAGCGTAACGTTATG
TTTTTTGATACGTAATGGGT

Product: transcription antitermination protein nusG

Products: NA

Alternate protein names: Transcription Antitermination Protein NusG; Nusg Antitermination Factor; NGN Domain Protein; Transcription Antiterminator; Transcription Termination Factor NusG Domain Protein; Transcriptional Antiterminator; Transcriptional Regulator; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antitermination Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MGDVECVHWYAVYVRSRHEKKVHQLFLEKELTSFLPLLETMRQWSDRKKKVYEPLFRGYVFVNIAMRRDHIRVLDTDGVI
KFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDALPPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEIS
IFPELLVPIARRSTESSDVL

Sequences:

>Translated_180_residues
MGDVECVHWYAVYVRSRHEKKVHQLFLEKELTSFLPLLETMRQWSDRKKKVYEPLFRGYVFVNIAMRRDHIRVLDTDGVI
KFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDALPPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEIS
IFPELLVPIARRSTESSDVL
>Mature_179_residues
GDVECVHWYAVYVRSRHEKKVHQLFLEKELTSFLPLLETMRQWSDRKKKVYEPLFRGYVFVNIAMRRDHIRVLDTDGVIK
FIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDALPPGQLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISI
FPELLVPIARRSTESSDVL

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20743; Mature: 20611

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDVECVHWYAVYVRSRHEKKVHQLFLEKELTSFLPLLETMRQWSDRKKKVYEPLFRGYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
FVNIAMRRDHIRVLDTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDALPPG
EEEEEEECCCEEEECCCCEEEEEECCCCCCEECCCCHHHHHHHHHCCCHHHHHHHCCCHH
QLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISIFPELLVPIARRSTESSDVL
HHHHHHHCCCCCCCCEEEECCCCCEEEEEEHHHHCCCEEEEHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GDVECVHWYAVYVRSRHEKKVHQLFLEKELTSFLPLLETMRQWSDRKKKVYEPLFRGYV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
FVNIAMRRDHIRVLDTDGVIKFIGIGKKPSVIGCRDIEWLKTLVRESDSIHQTVDALPPG
EEEEEEECCCEEEECCCCEEEEEECCCCCCEECCCCHHHHHHHHHCCCHHHHHHHCCCHH
QLVRVLAGPFKDFEGVVLKGGRESRLVVFFDSIMQGVEISIFPELLVPIARRSTESSDVL
HHHHHHHCCCCCCCCEEEECCCCCEEEEEEHHHHCCCEEEEHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA