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The map label for this gene is rfaF [H]

Identifier: 119358282

GI number: 119358282

Start: 2878427

End: 2879428

Strand: Reverse

Name: rfaF [H]

Synonym: Cpha266_2514

Alternate gene names: 119358282

Gene position: 2879428-2878427 (Counterclockwise)

Preceding gene: 119358283

Following gene: 119358281

Centisome position: 91.88

GC content: 51.8

Gene sequence:

>1002_bases
ATGCAAGCACTCAAAAGGGTTCTGGTGGTTCGCTTAAGCTCCATCGGCGACATTATTCTCACTACACCGTTGCTCAGAAG
GTTGAAGGCCCTCTGGCCGGATGTCGAGATAGATTATTATACCAGGCGGTCGTTTGTCGGGCTTCTTGCCTCAAATCCGA
GGGTATCGAAGGTTTTTACCGGGGAAGACCCTCCTTCGGGTCCCTATGATCTTGTGATCGATCTCCAGAATAATTTTCGC
TCGCATGCGATGATCAGGTCGCTTGAGGCTGGTCGCACTGCGCGATACCGTAAACATAACTGGAAAAAATGGCTTCTGAT
CCATTTCGGGATTGATCTGTACGGTTCCGGTCAAAGCGTTGTAGATCGTTATCAGAGTGCTGTGAAGGAGTTTGGCGTTC
AGAGCGATGTTCAGGGGTGCGAGCTCTATCCTGCTGCCGGGGAGCGGGCGTTTGCCGTTCCATTTTTTTCTGACGGTCAA
CCGACGCTCGCGCTCTGTTTTGGCGCGAAGCATTTTACCAAACGATATCCATCTCGTCGCTTTGCGACGGTGCTCTCCCT
GCTGTTTGCAACGTTGCCTTTGCGGGTGCTGCTTCTTGGCGGGCAAGAGGATGCTCCGTATGCCATTGAAATAATGCAGG
CCTTGCCGGAGCACTTCCGGCATGCTGTCGTAAACCTTGCGGGGAGCTGTTCGCTTATGCAGACGGCGGCGTTGCTCGAA
CGGTGCGATGCCGTGCTTTCTAATGATACGGGTCTGATGCATATGGCCTCAGCGTTCGGTAAAAAGCTTTTTGTCCTGTT
CGGTTCTTCAAGTGCATTCTTCGGCTTTCTTCCCTACCATACGCCGTTTGAGCTGTTTGAAGTGGCGGGTCTCCGCTGTC
GTCCCTGCTCTCATATCGGTCGCGATCGATGCCCGAAAGGCCATTTTCGTTGTATGAATGAGTTGTCTGAATCGCTGATT
GCCAAAAAGATTGTCGACTATTTTAACACTGAACGGTCATGA

Upstream 100 bases:

>100_bases
TGCAGGAGATAGAAGAGCGTCTTGCACTTCTTGAGGGATCGTTGAATTCGAAGCGCAAATCGGGTTACAAGGCCTGGTGG
GAGTTTTGGTCGTAACCGTC

Downstream 100 bases:

>100_bases
AAATAGCCTCGTGGAATGTCAATGGTATCCGGGCCCGTCAGGAGGCTCTTGTTTCGTGGATTGGACGCAATTCGCCGGAC
GTTCTCGTTCTGCAGGAGGT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MQALKRVLVVRLSSIGDIILTTPLLRRLKALWPDVEIDYYTRRSFVGLLASNPRVSKVFTGEDPPSGPYDLVIDLQNNFR
SHAMIRSLEAGRTARYRKHNWKKWLLIHFGIDLYGSGQSVVDRYQSAVKEFGVQSDVQGCELYPAAGERAFAVPFFSDGQ
PTLALCFGAKHFTKRYPSRRFATVLSLLFATLPLRVLLLGGQEDAPYAIEIMQALPEHFRHAVVNLAGSCSLMQTAALLE
RCDAVLSNDTGLMHMASAFGKKLFVLFGSSSAFFGFLPYHTPFELFEVAGLRCRPCSHIGRDRCPKGHFRCMNELSESLI
AKKIVDYFNTERS

Sequences:

>Translated_333_residues
MQALKRVLVVRLSSIGDIILTTPLLRRLKALWPDVEIDYYTRRSFVGLLASNPRVSKVFTGEDPPSGPYDLVIDLQNNFR
SHAMIRSLEAGRTARYRKHNWKKWLLIHFGIDLYGSGQSVVDRYQSAVKEFGVQSDVQGCELYPAAGERAFAVPFFSDGQ
PTLALCFGAKHFTKRYPSRRFATVLSLLFATLPLRVLLLGGQEDAPYAIEIMQALPEHFRHAVVNLAGSCSLMQTAALLE
RCDAVLSNDTGLMHMASAFGKKLFVLFGSSSAFFGFLPYHTPFELFEVAGLRCRPCSHIGRDRCPKGHFRCMNELSESLI
AKKIVDYFNTERS
>Mature_333_residues
MQALKRVLVVRLSSIGDIILTTPLLRRLKALWPDVEIDYYTRRSFVGLLASNPRVSKVFTGEDPPSGPYDLVIDLQNNFR
SHAMIRSLEAGRTARYRKHNWKKWLLIHFGIDLYGSGQSVVDRYQSAVKEFGVQSDVQGCELYPAAGERAFAVPFFSDGQ
PTLALCFGAKHFTKRYPSRRFATVLSLLFATLPLRVLLLGGQEDAPYAIEIMQALPEHFRHAVVNLAGSCSLMQTAALLE
RCDAVLSNDTGLMHMASAFGKKLFVLFGSSSAFFGFLPYHTPFELFEVAGLRCRPCSHIGRDRCPKGHFRCMNELSESLI
AKKIVDYFNTERS

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=296, Percent_Identity=27.3648648648649, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37408; Mature: 37408

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALKRVLVVRLSSIGDIILTTPLLRRLKALWPDVEIDYYTRRSFVGLLASNPRVSKVFT
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCEEEEEC
GEDPPSGPYDLVIDLQNNFRSHAMIRSLEAGRTARYRKHNWKKWLLIHFGIDLYGSGQSV
CCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCEEECCCHHH
VDRYQSAVKEFGVQSDVQGCELYPAAGERAFAVPFFSDGQPTLALCFGAKHFTKRYPSRR
HHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECHHHHHHHCCCHH
FATVLSLLFATLPLRVLLLGGQEDAPYAIEIMQALPEHFRHAVVNLAGSCSLMQTAALLE
HHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RCDAVLSNDTGLMHMASAFGKKLFVLFGSSSAFFGFLPYHTPFELFEVAGLRCRPCSHIG
HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCEEEECCCCCHHHHHHHCCCCCCCHHHCC
RDRCPKGHFRCMNELSESLIAKKIVDYFNTERS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQALKRVLVVRLSSIGDIILTTPLLRRLKALWPDVEIDYYTRRSFVGLLASNPRVSKVFT
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCEEEEEC
GEDPPSGPYDLVIDLQNNFRSHAMIRSLEAGRTARYRKHNWKKWLLIHFGIDLYGSGQSV
CCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCEEECCCHHH
VDRYQSAVKEFGVQSDVQGCELYPAAGERAFAVPFFSDGQPTLALCFGAKHFTKRYPSRR
HHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECHHHHHHHCCCHH
FATVLSLLFATLPLRVLLLGGQEDAPYAIEIMQALPEHFRHAVVNLAGSCSLMQTAALLE
HHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RCDAVLSNDTGLMHMASAFGKKLFVLFGSSSAFFGFLPYHTPFELFEVAGLRCRPCSHIG
HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCEEEECCCCCHHHHHHHCCCCCCCHHHCC
RDRCPKGHFRCMNELSESLIAKKIVDYFNTERS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]