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The map label for this gene is ycbB [H]

Identifier: 119357927

GI number: 119357927

Start: 2479552

End: 2481243

Strand: Reverse

Name: ycbB [H]

Synonym: Cpha266_2142

Alternate gene names: 119357927

Gene position: 2481243-2479552 (Counterclockwise)

Preceding gene: 119357928

Following gene: 119357926

Centisome position: 79.17

GC content: 48.7

Gene sequence:

>1692_bases
ATGCCTTTTATTAGTATTATTACTTATTTTCTCGTTTGTCTCGCGTTCAGTCCGGTTAAACAGGAGTCTCGTCAGCAGTT
GCAGTCTGATTCTTCAGCTCAGGCTCTGCAGACGAAAAAAACGGATCTCAGTCCTGTTGCTGAGCAGATTCGCTGTCATT
TTGAAAAAGTTCAGGGTATCGCTCCATCAGATGCTGTTCGTCAAACCTTTAACAATCGCCTTGCTCTTTTTTATACAGCA
AGGGAGTTTAAGCCGGTCTGGACAAAACAGACCATGGCGGCAGAGCTTATAAGCGCAATCGATAAAGCTGAGCAGCACGG
TTTGATTCCTGCCGATTATCACAGCACAGAGATCAGGTATTTTTCCGAAAATCCGCCTTTAACTCCCCAACTGCAGGCAC
GGTATGATCTGCTTTTGAGCGACGCGTTTCTTACGCTTGCCTACCATTTACGATTTGGAAAGGTTTTGCCTGAAAGCCTT
GATCCTGACTGGAATGTGAACCGTACTCTTGCAAAAAGCGCGTTGGAGTTCAGACTTCAGCAGGCTATTGCTGCCGAAAG
GATTGCCGGTCTGCTCGACGAGCTTTCTCCTCGTCATCCGGGTTATGAAAGGATGAAAAAAGGATTGGCGCACTATCGGG
TCATTGTGAAAACAGGTGGGTGGCAGAAAGTGACCGAGGGGAAAAAAATTAAAGAGGGTGATCGTGACAACCGTGTGCGG
CAGATTCGCAGGCGTCTTCAGGAGTCCGGCGACCTTGTTTTCCGCTCAGCAGATACCTCCAGAGTGTTCAGCAAAGCCAT
GGCTGATGCTGTTGTCCGGTTCCAGAAACGAAATGGTCTCAGTGTTGACGGAGCTGCCGGAGCGGAGACGATCAGGGAGA
TGAACATTTCGGCAGCGGAGCGTATCGAGCAGATTCGTATCAATATGGAGCGGTACCGCTGGTTTATTGGTGATCTCGAG
CAGAGAGCTGTTCTGGTGAATATTCCGGGATTTACGCTGCAATATATTGATAATGGTCAGCCTCGCTGGGAAACCAGAGT
CATTGTCGGCAAAACGGGACGTGAAACCCCGTTGTTCAAAGCCGATATGCAGTATATTGTTTTTAATCCGCAATGGGTAA
TACCGCCAACCATTCTTGCAAAAGATGCGCTTCCGGGTATTCGTAAAAGCCGGTCCTATCTCTACAGCAGAAACCTTAAA
GTCATTGATCGCAACGGACGGGTAGTTGATCCGGCAACGGTCAACTGGTCGCAATACACGGCAGCTAACCTGCCATACCG
ACTGCAGCAGACTGCCGGAGATCACGGATCGCTGGGACGAATCAAGTTTATGCTGCCCAACAAACACATTGTCTATCTGC
ACGACACCCCCCACAAGGAGTTGTTTCAGAAAAGCACCAGAAACTTCAGTTCAGGCTGTATCAGAGTGCAGAATCCTCTC
GAACTTGCCGAACTGGTGCTGCAGGACAGCGTCAAATGGAACAGCGACGCGATCAATGCTGCCATCAAGACGGGCAAAAC
AAGCAACGTTAATCTCCCGAAACATATTCCGGTCTATCTGCTCTACCTGACCGCTTTTCCCCAGGATGATGCAATTCACT
TCCGGGGTGATGTCTATAACAGGGATAACGATGTTCTCAAAGCGCTGAACAAGTCTCTTCCTGAATTTAAAACGGAAAGC
TGCGGCTTATAG

Upstream 100 bases:

>100_bases
GCCTGTTTATCTACCACAACGATGTTGAGTACACCTCGGCATCTTCGCTCCTGAATCCTGATATCGCACGTTTTCAGGCT
GGATACGGAGGTCAGTCGTA

Downstream 100 bases:

>100_bases
ATAATGTCATTTCCGGTTAACATTATGGTTGAACGGGAGTTTTATACCTCCTGTTCTCCTCAGAAGGTCTTTCTTCTGCT
TGCCGATGTTCCCCGTTCCG

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MPFISIITYFLVCLAFSPVKQESRQQLQSDSSAQALQTKKTDLSPVAEQIRCHFEKVQGIAPSDAVRQTFNNRLALFYTA
REFKPVWTKQTMAAELISAIDKAEQHGLIPADYHSTEIRYFSENPPLTPQLQARYDLLLSDAFLTLAYHLRFGKVLPESL
DPDWNVNRTLAKSALEFRLQQAIAAERIAGLLDELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVR
QIRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAERIEQIRINMERYRWFIGDLE
QRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFKADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLK
VIDRNGRVVDPATVNWSQYTAANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPL
ELAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDDAIHFRGDVYNRDNDVLKALNKSLPEFKTES
CGL

Sequences:

>Translated_563_residues
MPFISIITYFLVCLAFSPVKQESRQQLQSDSSAQALQTKKTDLSPVAEQIRCHFEKVQGIAPSDAVRQTFNNRLALFYTA
REFKPVWTKQTMAAELISAIDKAEQHGLIPADYHSTEIRYFSENPPLTPQLQARYDLLLSDAFLTLAYHLRFGKVLPESL
DPDWNVNRTLAKSALEFRLQQAIAAERIAGLLDELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVR
QIRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAERIEQIRINMERYRWFIGDLE
QRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFKADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLK
VIDRNGRVVDPATVNWSQYTAANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPL
ELAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDDAIHFRGDVYNRDNDVLKALNKSLPEFKTES
CGL
>Mature_562_residues
PFISIITYFLVCLAFSPVKQESRQQLQSDSSAQALQTKKTDLSPVAEQIRCHFEKVQGIAPSDAVRQTFNNRLALFYTAR
EFKPVWTKQTMAAELISAIDKAEQHGLIPADYHSTEIRYFSENPPLTPQLQARYDLLLSDAFLTLAYHLRFGKVLPESLD
PDWNVNRTLAKSALEFRLQQAIAAERIAGLLDELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVRQ
IRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAERIEQIRINMERYRWFIGDLEQ
RAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFKADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLKV
IDRNGRVVDPATVNWSQYTAANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPLE
LAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDDAIHFRGDVYNRDNDVLKALNKSLPEFKTESC
GL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=525, Percent_Identity=32.1904761904762, Blast_Score=243, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64159; Mature: 64028

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFISIITYFLVCLAFSPVKQESRQQLQSDSSAQALQTKKTDLSPVAEQIRCHFEKVQGI
CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
APSDAVRQTFNNRLALFYTAREFKPVWTKQTMAAELISAIDKAEQHGLIPADYHSTEIRY
CCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
FSENPPLTPQLQARYDLLLSDAFLTLAYHLRFGKVLPESLDPDWNVNRTLAKSALEFRLQ
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
QAIAAERIAGLLDELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVR
HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHH
QIRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAE
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHH
RIEQIRINMERYRWFIGDLEQRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFK
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCCCCEE
ADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLKVIDRNGRVVDPATVNWSQYT
CCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEECCCCCCCCHHH
AANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPL
HCCCCCHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCHH
ELAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDDAIHFRGDVYN
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCC
RDNDVLKALNKSLPEFKTESCGL
CCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PFISIITYFLVCLAFSPVKQESRQQLQSDSSAQALQTKKTDLSPVAEQIRCHFEKVQGI
CHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
APSDAVRQTFNNRLALFYTAREFKPVWTKQTMAAELISAIDKAEQHGLIPADYHSTEIRY
CCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
FSENPPLTPQLQARYDLLLSDAFLTLAYHLRFGKVLPESLDPDWNVNRTLAKSALEFRLQ
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
QAIAAERIAGLLDELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVR
HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHH
QIRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAE
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHH
RIEQIRINMERYRWFIGDLEQRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFK
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCCCCEE
ADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLKVIDRNGRVVDPATVNWSQYT
CCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEECCCCCCCCHHH
AANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPL
HCCCCCHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCHH
ELAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDDAIHFRGDVYN
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCC
RDNDVLKALNKSLPEFKTESCGL
CCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]