| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is menE [H]
Identifier: 119357885
GI number: 119357885
Start: 2426536
End: 2427993
Strand: Direct
Name: menE [H]
Synonym: Cpha266_2093
Alternate gene names: 119357885
Gene position: 2426536-2427993 (Clockwise)
Preceding gene: 119357884
Following gene: 119357890
Centisome position: 77.43
GC content: 53.84
Gene sequence:
>1458_bases ATGGACATTATAAACCAGGCCGCTCTCCGGTTCGCCGATTCGCCTCTGCTTGTCACAAGGGAAAAAACACTCTCTTTCAG GGAGTGTTCTGTAAAAGCCTCACAAATCGCCAACACCCTTTTCAAAAAAGGGTATCGTCCGGGTGACATTGCAGCCCTTC TGCTTCCCGGTTCGCCCGAGTATGTGCTGATCCTCCTCGGACTGCTCAAAGCAGGCCTGATCAGCGCGCCCCTGAACAAC CGTTTTCCGGAGAAACAGCTTTCGCTTGCTCTTGAACAACTGCAACCCCCGCTTCTCCTGACGGAGGCTGATTCGGGGAT GCAGAAAAACCGCATGACGACGCTCTCGATCCACGACCTGCTCAAGGAAGCCGAAAGCGCATCCCCGGAGCCGGAGTTTC CTGTCAATGAGAGCCGCGAGCGCCCTGTAACCATCATTCACACCTCGGCAAGCTCGGGAAAACCGAAAGCCGCAGTACAC AGTTTCAGCAATCACTGGTTCAGCGCTCTTGGATCGGCCTCTAATCTGCCGCTTGAAAAGGGGGACTGCTGGCTCCTCTC CCTGCCGCTCTTTCATATCGGCGGCTATGCCGTGCTCTTCAAAGCCCTGCTTTCAGGTTCATCGGTTGCCCTGCCGGATC CGTCTGACTCTCTTGAAGAGTGTTTGCGGATGTTCTCTCTGACCCATCTCTCGCTGGTACCGACCCAGTTGTACCGCCTG CTGCGACAACCGTCGATCATCCCTGCCCTTGCTTCGCTCAAAGCGCTCCTGCTCGGAGGAAGTCCGATACCCCCTGCCCT GCTTGCCGACACGATCCGCAAAGGCATTCCGGTCTATCTCAGCTACGGATCGACCGAGATGAGCTCTCAAATCGCAACCA CGCCGAATCCGGCAGACTCCATGCAGGAAAACAGCGGCAGAATACTTCCCTTTCGCGAAGTTATGACCGATGCTGAGGGA GAGATACTTTGCAAAGGAGAGTGCCTCTTTCAGGGTTATCTGCAAAATGGCCGGATTGAACCGCAAACAGACGGCGACGG CTGGTTTCATACGAACGATATCGGGAGAATCGATGAGAAAGGAATGATAACCGTACTGGGAAGAAAAGACAATATGTTCA TCTCCGGAGGCGAAAACATCCATCCTGAAGAGATAGAAAAAGCTCTTCTCGATATGGAGGGAATCCTCCAGGCGGTCGTT GTGCCCGTTATCGACAAAGAGTACGGAAGCCGACCTGCGGCGTTCATTCAGACAGAGGAGAGTGAAAAACCCGATGATGA AGCCATTGCCGGATACATACGCAAAAAGCTCGGGAAACTGAAAACGCCGGTAAAGATTACCAGAACCCTTCAGTGGGAAA CTCTTGCGGGTTCACAAAAAATCGACAGAAAGCAATACCGCCAACTTGCCGGAGAGGCTCTTGTGCCGACTATCGAGCCT TCGCCGCCTGACGTTTGA
Upstream 100 bases:
>100_bases TCGATCTCCCTTTCGGAAGTTCATCCGACACGCTCACGCCTCAGGAACTCTACTGGAATGGCCACAAGGTCGCAACCTCG CACCTCAAGCCTTCATCAAT
Downstream 100 bases:
>100_bases GTCTGAAAACCATAAATATCCCCCCCAGACCTGTAACTGGCGCATATAAACCTGCAGAAACCACGATCCAGACAAGAAGA TCTTTCAGATTGATATCCGG
Product: O-succinylbenzoate-CoA ligase
Products: NA
Alternate protein names: OSB-CoA synthetase; o-succinylbenzoyl-CoA synthetase [H]
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MDIINQAALRFADSPLLVTREKTLSFRECSVKASQIANTLFKKGYRPGDIAALLLPGSPEYVLILLGLLKAGLISAPLNN RFPEKQLSLALEQLQPPLLLTEADSGMQKNRMTTLSIHDLLKEAESASPEPEFPVNESRERPVTIIHTSASSGKPKAAVH SFSNHWFSALGSASNLPLEKGDCWLLSLPLFHIGGYAVLFKALLSGSSVALPDPSDSLEECLRMFSLTHLSLVPTQLYRL LRQPSIIPALASLKALLLGGSPIPPALLADTIRKGIPVYLSYGSTEMSSQIATTPNPADSMQENSGRILPFREVMTDAEG EILCKGECLFQGYLQNGRIEPQTDGDGWFHTNDIGRIDEKGMITVLGRKDNMFISGGENIHPEEIEKALLDMEGILQAVV VPVIDKEYGSRPAAFIQTEESEKPDDEAIAGYIRKKLGKLKTPVKITRTLQWETLAGSQKIDRKQYRQLAGEALVPTIEP SPPDV
Sequences:
>Translated_485_residues MDIINQAALRFADSPLLVTREKTLSFRECSVKASQIANTLFKKGYRPGDIAALLLPGSPEYVLILLGLLKAGLISAPLNN RFPEKQLSLALEQLQPPLLLTEADSGMQKNRMTTLSIHDLLKEAESASPEPEFPVNESRERPVTIIHTSASSGKPKAAVH SFSNHWFSALGSASNLPLEKGDCWLLSLPLFHIGGYAVLFKALLSGSSVALPDPSDSLEECLRMFSLTHLSLVPTQLYRL LRQPSIIPALASLKALLLGGSPIPPALLADTIRKGIPVYLSYGSTEMSSQIATTPNPADSMQENSGRILPFREVMTDAEG EILCKGECLFQGYLQNGRIEPQTDGDGWFHTNDIGRIDEKGMITVLGRKDNMFISGGENIHPEEIEKALLDMEGILQAVV VPVIDKEYGSRPAAFIQTEESEKPDDEAIAGYIRKKLGKLKTPVKITRTLQWETLAGSQKIDRKQYRQLAGEALVPTIEP SPPDV >Mature_485_residues MDIINQAALRFADSPLLVTREKTLSFRECSVKASQIANTLFKKGYRPGDIAALLLPGSPEYVLILLGLLKAGLISAPLNN RFPEKQLSLALEQLQPPLLLTEADSGMQKNRMTTLSIHDLLKEAESASPEPEFPVNESRERPVTIIHTSASSGKPKAAVH SFSNHWFSALGSASNLPLEKGDCWLLSLPLFHIGGYAVLFKALLSGSSVALPDPSDSLEECLRMFSLTHLSLVPTQLYRL LRQPSIIPALASLKALLLGGSPIPPALLADTIRKGIPVYLSYGSTEMSSQIATTPNPADSMQENSGRILPFREVMTDAEG EILCKGECLFQGYLQNGRIEPQTDGDGWFHTNDIGRIDEKGMITVLGRKDNMFISGGENIHPEEIEKALLDMEGILQAVV VPVIDKEYGSRPAAFIQTEESEKPDDEAIAGYIRKKLGKLKTPVKITRTLQWETLAGSQKIDRKQYRQLAGEALVPTIEP SPPDV
Specific function: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl- CoA (OSB-CoA) [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=521, Percent_Identity=25.7197696737044, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI38505220, Length=498, Percent_Identity=26.1044176706827, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI122937307, Length=434, Percent_Identity=25.5760368663594, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI115511026, Length=498, Percent_Identity=25.9036144578313, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI58082049, Length=513, Percent_Identity=25.3411306042885, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI42544132, Length=501, Percent_Identity=24.1516966067864, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI157311624, Length=511, Percent_Identity=25.2446183953033, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI157311622, Length=511, Percent_Identity=25.2446183953033, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI227499619, Length=514, Percent_Identity=23.3463035019455, Blast_Score=89, Evalue=9e-18, Organism=Homo sapiens, GI40807491, Length=511, Percent_Identity=20.9393346379648, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI57165410, Length=165, Percent_Identity=29.6969696969697, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI57165412, Length=165, Percent_Identity=29.6969696969697, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI42794756, Length=162, Percent_Identity=30.2469135802469, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI42794760, Length=162, Percent_Identity=30.2469135802469, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI42794758, Length=162, Percent_Identity=30.2469135802469, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1788595, Length=448, Percent_Identity=33.9285714285714, Blast_Score=214, Evalue=1e-56, Organism=Escherichia coli, GI145693145, Length=459, Percent_Identity=27.8867102396514, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI221142682, Length=462, Percent_Identity=24.8917748917749, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1786810, Length=511, Percent_Identity=24.6575342465753, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI1786801, Length=439, Percent_Identity=23.9179954441913, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788107, Length=506, Percent_Identity=22.5296442687747, Blast_Score=101, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17558820, Length=472, Percent_Identity=27.3305084745763, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI32563687, Length=460, Percent_Identity=23.695652173913, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17560308, Length=494, Percent_Identity=23.4817813765182, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994703, Length=541, Percent_Identity=21.2569316081331, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994694, Length=541, Percent_Identity=21.2569316081331, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994690, Length=541, Percent_Identity=21.2569316081331, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17557194, Length=518, Percent_Identity=22.3938223938224, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17538037, Length=490, Percent_Identity=23.8775510204082, Blast_Score=108, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17559526, Length=496, Percent_Identity=24.7983870967742, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17551278, Length=448, Percent_Identity=23.6607142857143, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17531443, Length=482, Percent_Identity=23.8589211618257, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71996755, Length=457, Percent_Identity=23.1947483588621, Blast_Score=89, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17560140, Length=465, Percent_Identity=23.8709677419355, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17510401, Length=163, Percent_Identity=29.4478527607362, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564090, Length=371, Percent_Identity=24.2587601078167, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17556356, Length=273, Percent_Identity=28.9377289377289, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=455, Percent_Identity=23.5164835164835, Blast_Score=97, Evalue=5e-21, Organism=Drosophila melanogaster, GI24581924, Length=512, Percent_Identity=25.78125, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24583465, Length=525, Percent_Identity=24.3809523809524, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24583463, Length=525, Percent_Identity=24.3809523809524, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI281364798, Length=525, Percent_Identity=24.3809523809524, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI21355181, Length=457, Percent_Identity=24.2888402625821, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI20130357, Length=338, Percent_Identity=24.2603550295858, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI18859661, Length=440, Percent_Identity=23.6363636363636, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI21356947, Length=372, Percent_Identity=23.1182795698925, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI21358303, Length=456, Percent_Identity=21.4912280701754, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648260, Length=314, Percent_Identity=24.203821656051, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24653035, Length=451, Percent_Identity=22.1729490022173, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI161076582, Length=458, Percent_Identity=21.8340611353712, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI19921316, Length=141, Percent_Identity=32.6241134751773, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24648253, Length=491, Percent_Identity=19.959266802444, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648255, Length=457, Percent_Identity=20.3501094091904, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR010192 - InterPro: IPR023015 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.26 [H]
Molecular weight: Translated: 53041; Mature: 53041
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIINQAALRFADSPLLVTREKTLSFRECSVKASQIANTLFKKGYRPGDIAALLLPGSPE CCCHHHHHHHHCCCCEEEEHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCH YVLILLGLLKAGLISAPLNNRFPEKQLSLALEQLQPPLLLTEADSGMQKNRMTTLSIHDL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEHHHHHH LKEAESASPEPEFPVNESRERPVTIIHTSASSGKPKAAVHSFSNHWFSALGSASNLPLEK HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC GDCWLLSLPLFHIGGYAVLFKALLSGSSVALPDPSDSLEECLRMFSLTHLSLVPTQLYRL CCEEEEECHHHHHCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LRQPSIIPALASLKALLLGGSPIPPALLADTIRKGIPVYLSYGSTEMSSQIATTPNPADS HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCHHH MQENSGRILPFREVMTDAEGEILCKGECLFQGYLQNGRIEPQTDGDGWFHTNDIGRIDEK HHCCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC GMITVLGRKDNMFISGGENIHPEEIEKALLDMEGILQAVVVPVIDKEYGSRPAAFIQTEE CEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC SEKPDDEAIAGYIRKKLGKLKTPVKITRTLQWETLAGSQKIDRKQYRQLAGEALVPTIEP CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCC SPPDV CCCCC >Mature Secondary Structure MDIINQAALRFADSPLLVTREKTLSFRECSVKASQIANTLFKKGYRPGDIAALLLPGSPE CCCHHHHHHHHCCCCEEEEHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCH YVLILLGLLKAGLISAPLNNRFPEKQLSLALEQLQPPLLLTEADSGMQKNRMTTLSIHDL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEHHHHHH LKEAESASPEPEFPVNESRERPVTIIHTSASSGKPKAAVHSFSNHWFSALGSASNLPLEK HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC GDCWLLSLPLFHIGGYAVLFKALLSGSSVALPDPSDSLEECLRMFSLTHLSLVPTQLYRL CCEEEEECHHHHHCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LRQPSIIPALASLKALLLGGSPIPPALLADTIRKGIPVYLSYGSTEMSSQIATTPNPADS HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCHHH MQENSGRILPFREVMTDAEGEILCKGECLFQGYLQNGRIEPQTDGDGWFHTNDIGRIDEK HHCCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC GMITVLGRKDNMFISGGENIHPEEIEKALLDMEGILQAVVVPVIDKEYGSRPAAFIQTEE CEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC SEKPDDEAIAGYIRKKLGKLKTPVKITRTLQWETLAGSQKIDRKQYRQLAGEALVPTIEP CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCC SPPDV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA