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The map label for this gene is xerD [H]

Identifier: 119357861

GI number: 119357861

Start: 2402627

End: 2403886

Strand: Reverse

Name: xerD [H]

Synonym: Cpha266_2069

Alternate gene names: 119357861

Gene position: 2403886-2402627 (Counterclockwise)

Preceding gene: 119357862

Following gene: 119357860

Centisome position: 76.71

GC content: 50.71

Gene sequence:

>1260_bases
ATGGCTTCCGGAGAGGTTGCCTTCTACATTGATACTTATCACAAGGATTACGGGCGGTTCTCGCAGAAAACCGGGTTACA
GGTGAATCCGAAAAACAGGAAGGAGCATAGGGATGTTCTGGCTGAGGCTCAGGATAAGGCTCGCCAGATTGAAAAGGATT
TGGTTCGTAATCCTGCCGGAGTGTTTGATCGAAAGGTTAAGGCGGCAGATGACTTCATCGAGTTCTACCGTCGATATGCC
GAAAAAGACAATTATCCGAAGTATGCCAATGTTCTTCCTATCCTCCGGCGGTTTTCATTGGGCGTGATTCATTTCGCGTC
CTTGAATAGTGCTTGGCTTGAGCGGTTCAAATTCTATCTGCTTTCCCTTGAGTCCATAAGTCAGAACACGGCGGGCGGGT
ACCTTACTTCGGTAAAGACGGTTCTCAGGCAAGCTTTCCGGGAAGGCTATCTCATCGAAGATATTTCCGCAAAGGTTCCC
GGTATCAAGAAAACAGACATTCAGCGACACTTTCTTCCGGTTGAACAGGTCGAGGCATTGCACAAGGCAAAGAGCAATAA
TGAGATGATCAAGCAAGCCTTCCTTTTCGCCTGCTTTTCCGGTTTGAGGCTCTCGGATGTTCAGGCCTTATACTGGGAAC
AGATCAGCCAGATCAATGGCGCTCCATATATCCAGTTTCGACAGAGAAAAACCTGCCAGTACGAAAATCTGCCGCTTTCC
GAGCAGGCTGCTACGATTCTTCAGGAAGTGAGGGCGTTACATGCCGAATATGCTCCTTCCGGTAGTGATAAGGTTTTTAT
TCTGCCGAGCCGTGAACGGATAGCTCAGGTTCTGGAAGTCTGGGGTATTCGTGCGGGGCTGCCGTTCAAACTCCATTTTC
ATGTTTCCCGTCATACCTTTGCAACCATGAACCTTACTGCCGGGTGCGACCTCTATACCGTATCAAAGCTTCTGGGGCAC
AGGGAGATTAAGACTACTCAAATATATGGCAGGATTGTTGACAGCAAGAAACTTGATGCGGTACAGGCATTACCGGTTCT
TCAGGGAGCTATCGGAAACGGGGCGGCTACTGCGGGGATTCAACAGACCGGGTTGCTTCCCTCCGTCGGGAAGAGTCCTG
TTGTGCAGGCGCTTGAGGCAGAGGGGGAAAGGGTCGCCAGAGCGTTGAAGCTCCAGCGGAACGGTTCAGGGCGGTATGAG
TTCGGGGGCCGTGAGTACACAGCAGCAGAGTTGGCAATTGAGGTTTCGGGCGGCGATTAA

Upstream 100 bases:

>100_bases
TTCTATCTGTTTTGTAACTTGTTTGAAGAGGAAGGGCTCTCTGTTACAGAAACAAGTTACAAAGCAGGGGAATATGGGCG
TTAAGGTCAGGGAAAGGAAG

Downstream 100 bases:

>100_bases
CATAAAACGGGATCGGGGGCGAGTATGGGCGAATTTGATAGACCTGAATGGGTTCCTTCGGAGGAAGAGCTTAGAGCTGA
ATTGTGTAATGCAAGAGAAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MASGEVAFYIDTYHKDYGRFSQKTGLQVNPKNRKEHRDVLAEAQDKARQIEKDLVRNPAGVFDRKVKAADDFIEFYRRYA
EKDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVP
GIKKTDIQRHFLPVEQVEALHKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLS
EQAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGH
REIKTTQIYGRIVDSKKLDAVQALPVLQGAIGNGAATAGIQQTGLLPSVGKSPVVQALEAEGERVARALKLQRNGSGRYE
FGGREYTAAELAIEVSGGD

Sequences:

>Translated_419_residues
MASGEVAFYIDTYHKDYGRFSQKTGLQVNPKNRKEHRDVLAEAQDKARQIEKDLVRNPAGVFDRKVKAADDFIEFYRRYA
EKDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVP
GIKKTDIQRHFLPVEQVEALHKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLS
EQAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGH
REIKTTQIYGRIVDSKKLDAVQALPVLQGAIGNGAATAGIQQTGLLPSVGKSPVVQALEAEGERVARALKLQRNGSGRYE
FGGREYTAAELAIEVSGGD
>Mature_418_residues
ASGEVAFYIDTYHKDYGRFSQKTGLQVNPKNRKEHRDVLAEAQDKARQIEKDLVRNPAGVFDRKVKAADDFIEFYRRYAE
KDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPG
IKKTDIQRHFLPVEQVEALHKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSE
QAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHR
EIKTTQIYGRIVDSKKLDAVQALPVLQGAIGNGAATAGIQQTGLLPSVGKSPVVQALEAEGERVARALKLQRNGSGRYEF
GGREYTAAELAIEVSGGD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47049; Mature: 46918

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGEVAFYIDTYHKDYGRFSQKTGLQVNPKNRKEHRDVLAEAQDKARQIEKDLVRNPAG
CCCCCEEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VFDRKVKAADDFIEFYRRYAEKDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEHHCCHHHHHHHHHHH
LSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEAL
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCHHHHCCCHHHHHHH
HKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLS
HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCH
EQAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTF
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
ATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQALPVLQGAIGNGAATAGI
EEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCC
QQTGLLPSVGKSPVVQALEAEGERVARALKLQRNGSGRYEFGGREYTAAELAIEVSGGD
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEECCCC
>Mature Secondary Structure 
ASGEVAFYIDTYHKDYGRFSQKTGLQVNPKNRKEHRDVLAEAQDKARQIEKDLVRNPAG
CCCCEEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VFDRKVKAADDFIEFYRRYAEKDNYPKYANVLPILRRFSLGVIHFASLNSAWLERFKFYL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEHHCCHHHHHHHHHHH
LSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEAL
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCHHHHCCCHHHHHHH
HKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLS
HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCH
EQAATILQEVRALHAEYAPSGSDKVFILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTF
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
ATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQALPVLQGAIGNGAATAGI
EEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHCCC
QQTGLLPSVGKSPVVQALEAEGERVARALKLQRNGSGRYEFGGREYTAAELAIEVSGGD
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]