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The map label for this gene is ykfC [H]

Identifier: 119357846

GI number: 119357846

Start: 2379403

End: 2381598

Strand: Reverse

Name: ykfC [H]

Synonym: Cpha266_2054

Alternate gene names: 119357846

Gene position: 2381598-2379403 (Counterclockwise)

Preceding gene: 119357847

Following gene: 119357845

Centisome position: 75.99

GC content: 52.55

Gene sequence:

>2196_bases
ATGGGATGGCTCTACAATCAGATGGCAATGCCCGAAACCATTTTTCAGGCCTGGTACAAAGTGGCATCGAACGATGGGCG
CCCGGGATGGGACAATACATCCATTCAGGACTACTCCCTTCGGCTTGAAGAAAACCTGAAATCCCTTTCGCACGCCCTGC
TGACAGGAACCTACAGGCAGAGCCCGCTGCTGAAGCTCGTTATGCTGAAGCCTGACGGAAAAGAGCGGGTGCTTCTGATT
CCCGGTGTGATTGACAGAGTTGCCCAGACAGCGGCATCAATCGTGCTCTCACCCATTATCGAAGCGGAGCTTGGCAACTG
CACCTTTGCCTACCGTCCGGGCATATCGCGTGAAGGAGCAGCACGGGAGATCGACCGGCTGCATCGCGAAGGGTACCAGT
GGGTGCTCGACGCCGACATCCGCAACTTTTTCGACAATGTTCGCCACGACCTGCTTTTTCAACGGCTTGTCGAACTTGTT
GACGACAAGGAGATGATCTCCCTGTTGCACCGCTGGCTTACCGCCGAAATTGTTGACGGGCTGAACCCCCGTACCCGCAA
CACGATGGGTCTCCCTCAGGGATGCCCGATATCACCGGCACTGGCGAACCTCTATCTTGACCGGTTTGATGAAACAATGG
AACAGCAGGGATTCAAACTGGTTCGTTTTGCCGACGACTATCTTGTACTCTGTAAAACCCGTCCCAAAGCCGAAGCTGCC
CTCAAGCTCTCTGAAAGCGCGCTTGCTGAGCTGAAGCTTGAACTGCACAGCGATAAAACCCGCATTACCACCTTTGCCGA
AGGATTCAAATATCTCGGCTACCTCTTTATCCGATCGCTGGTGATTCCCACCAAAATGCACCCTGAAGAGTGGTATGACA
AGCTCGGCAAATTCAGACTCCGCAAAAAGAGCGTGCACGCCCTTCCCGCTGACCCCGAAACCATGACCGGCGAAACATCG
CAGTTTGAACTCGAAACCGATCAGGGCGAAAAAATCGAACTCTCCAAGGAGGAGCTTCTGCAGACAGAGTTCGGCAAAAA
ACTGCTCGAAAGCCTCGATAAAAAGCAGTTGAATGTTGACGAATTTCTTGAAAAGATCTCCAGGCAGGACGAAGAGCGAC
AGAAAGAGAAACGGGAGGCACTGAAAAAACTCTACTCCCCCTTTCTCAATACGCTCTATCTGCAGGAGCAGGGGAGCCTT
ATGCGCAAGGATGGGGAGCGGTTCAGTATTGAAAAGGATGGGTCGGTCATTAACGAAGTGATTGTTCGCCGCATCGAACA
GGTTGTGATTTTCGGCAACGTCGCCCTCACCACACCGGTCATGCAATACTGCCTGCAGAACGAAATACCGGTCACCTTTC
TTTCGCAGCATGGCAAATACTTCGGCAGGCTTGAAGCAACCACTGCCGACAATGCTGAAATGCAGCGCTTTCACTTTCTG
CGTTCCATAGACGAACCCTTTGCGCTTGAAACCGCCCGTTCCATCGTAGCGGCAAAAATCAGCAACAGCAAAACCATGAT
TCGCCGCCGAAAAACCGTGGTGCAGGATCGCGACAGCACTCTGCAAAATAAAATGGCATACAATCTCGACATCATGGCCG
ATCTTGCCCTGAAAGCGGAAGCATCCACTGATATCGATGCGCTACGGGGGATCGAAGGCAAGGCATCGGCACTCTACTTC
GAATGTTACGGCATGCTTTTCAGCAAAAACCTGCCCTTTCACACCCGGTCGTTTCTGCGGGTACGACGACCGCCTACCGA
TCCGGTCAACAGTCTGCTCAGTTTCGGTTACACCATGCTGCACACCAACATATTCTCGATGGTGCAGGCAAGCGGCCTGA
ACCCCTATATCGGTTTTCTTCACGCCGAACGAAAAGGCAATCCCGCTCTGGTCAACGATCTGGTCGAAGAGTTCCGCACG
ATAGTCGATTCACTCGTGCTCTACACCCTCAACCGGGGTCTTTTGCAGGAAAAAGACTTCTACTACCGCAAAGATGAGCC
CGGTTGCTTTCTGTCGAACGACGCCCGCAAACGGTTTTTAAACATATTCGAAACAAGGATGTGGCAGGAATCCCGTGACG
GCTGCACCGGCAAAACGCTCAATTTCAGGCGGCATATCGAAAAACAGGTGAGGATCATGAGAGAGGTTATAGCCGGAACC
CGAACGCAGTACGACCCGTACAAGCTACCGGTATAA

Upstream 100 bases:

>100_bases
AAGGTGGATGTTGACGGGAACCGATCGTTTGAAATCGCCAGTCCGTTCATTATTACCTGATCAATCGGATCTTCCCCTAA
CCACGCTGACTTCAGATACT

Downstream 100 bases:

>100_bases
AAGGTAATTGATCAATCGAGACCTCACAAACAGTGAAACGCAAAACCCGGTTTTTTCGACAATAACGTCAAGCAGAATAA
AAGGTTACAGGGAAATTTAA

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MGWLYNQMAMPETIFQAWYKVASNDGRPGWDNTSIQDYSLRLEENLKSLSHALLTGTYRQSPLLKLVMLKPDGKERVLLI
PGVIDRVAQTAASIVLSPIIEAELGNCTFAYRPGISREGAAREIDRLHREGYQWVLDADIRNFFDNVRHDLLFQRLVELV
DDKEMISLLHRWLTAEIVDGLNPRTRNTMGLPQGCPISPALANLYLDRFDETMEQQGFKLVRFADDYLVLCKTRPKAEAA
LKLSESALAELKLELHSDKTRITTFAEGFKYLGYLFIRSLVIPTKMHPEEWYDKLGKFRLRKKSVHALPADPETMTGETS
QFELETDQGEKIELSKEELLQTEFGKKLLESLDKKQLNVDEFLEKISRQDEERQKEKREALKKLYSPFLNTLYLQEQGSL
MRKDGERFSIEKDGSVINEVIVRRIEQVVIFGNVALTTPVMQYCLQNEIPVTFLSQHGKYFGRLEATTADNAEMQRFHFL
RSIDEPFALETARSIVAAKISNSKTMIRRRKTVVQDRDSTLQNKMAYNLDIMADLALKAEASTDIDALRGIEGKASALYF
ECYGMLFSKNLPFHTRSFLRVRRPPTDPVNSLLSFGYTMLHTNIFSMVQASGLNPYIGFLHAERKGNPALVNDLVEEFRT
IVDSLVLYTLNRGLLQEKDFYYRKDEPGCFLSNDARKRFLNIFETRMWQESRDGCTGKTLNFRRHIEKQVRIMREVIAGT
RTQYDPYKLPV

Sequences:

>Translated_731_residues
MGWLYNQMAMPETIFQAWYKVASNDGRPGWDNTSIQDYSLRLEENLKSLSHALLTGTYRQSPLLKLVMLKPDGKERVLLI
PGVIDRVAQTAASIVLSPIIEAELGNCTFAYRPGISREGAAREIDRLHREGYQWVLDADIRNFFDNVRHDLLFQRLVELV
DDKEMISLLHRWLTAEIVDGLNPRTRNTMGLPQGCPISPALANLYLDRFDETMEQQGFKLVRFADDYLVLCKTRPKAEAA
LKLSESALAELKLELHSDKTRITTFAEGFKYLGYLFIRSLVIPTKMHPEEWYDKLGKFRLRKKSVHALPADPETMTGETS
QFELETDQGEKIELSKEELLQTEFGKKLLESLDKKQLNVDEFLEKISRQDEERQKEKREALKKLYSPFLNTLYLQEQGSL
MRKDGERFSIEKDGSVINEVIVRRIEQVVIFGNVALTTPVMQYCLQNEIPVTFLSQHGKYFGRLEATTADNAEMQRFHFL
RSIDEPFALETARSIVAAKISNSKTMIRRRKTVVQDRDSTLQNKMAYNLDIMADLALKAEASTDIDALRGIEGKASALYF
ECYGMLFSKNLPFHTRSFLRVRRPPTDPVNSLLSFGYTMLHTNIFSMVQASGLNPYIGFLHAERKGNPALVNDLVEEFRT
IVDSLVLYTLNRGLLQEKDFYYRKDEPGCFLSNDARKRFLNIFETRMWQESRDGCTGKTLNFRRHIEKQVRIMREVIAGT
RTQYDPYKLPV
>Mature_730_residues
GWLYNQMAMPETIFQAWYKVASNDGRPGWDNTSIQDYSLRLEENLKSLSHALLTGTYRQSPLLKLVMLKPDGKERVLLIP
GVIDRVAQTAASIVLSPIIEAELGNCTFAYRPGISREGAAREIDRLHREGYQWVLDADIRNFFDNVRHDLLFQRLVELVD
DKEMISLLHRWLTAEIVDGLNPRTRNTMGLPQGCPISPALANLYLDRFDETMEQQGFKLVRFADDYLVLCKTRPKAEAAL
KLSESALAELKLELHSDKTRITTFAEGFKYLGYLFIRSLVIPTKMHPEEWYDKLGKFRLRKKSVHALPADPETMTGETSQ
FELETDQGEKIELSKEELLQTEFGKKLLESLDKKQLNVDEFLEKISRQDEERQKEKREALKKLYSPFLNTLYLQEQGSLM
RKDGERFSIEKDGSVINEVIVRRIEQVVIFGNVALTTPVMQYCLQNEIPVTFLSQHGKYFGRLEATTADNAEMQRFHFLR
SIDEPFALETARSIVAAKISNSKTMIRRRKTVVQDRDSTLQNKMAYNLDIMADLALKAEASTDIDALRGIEGKASALYFE
CYGMLFSKNLPFHTRSFLRVRRPPTDPVNSLLSFGYTMLHTNIFSMVQASGLNPYIGFLHAERKGNPALVNDLVEEFRTI
VDSLVLYTLNRGLLQEKDFYYRKDEPGCFLSNDARKRFLNIFETRMWQESRDGCTGKTLNFRRHIEKQVRIMREVIAGTR
TQYDPYKLPV

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=240, Percent_Identity=26.25, Blast_Score=91, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6226521, Length=202, Percent_Identity=26.2376237623762, Blast_Score=85, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 84299; Mature: 84168

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWLYNQMAMPETIFQAWYKVASNDGRPGWDNTSIQDYSLRLEENLKSLSHALLTGTYRQ
CCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPLLKLVMLKPDGKERVLLIPGVIDRVAQTAASIVLSPIIEAELGNCTFAYRPGISREGA
CCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
AREIDRLHREGYQWVLDADIRNFFDNVRHDLLFQRLVELVDDKEMISLLHRWLTAEIVDG
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
LNPRTRNTMGLPQGCPISPALANLYLDRFDETMEQQGFKLVRFADDYLVLCKTRPKAEAA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHH
LKLSESALAELKLELHSDKTRITTFAEGFKYLGYLFIRSLVIPTKMHPEEWYDKLGKFRL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RKKSVHALPADPETMTGETSQFELETDQGEKIELSKEELLQTEFGKKLLESLDKKQLNVD
HHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHH
EFLEKISRQDEERQKEKREALKKLYSPFLNTLYLQEQGSLMRKDGERFSIEKDGSVINEV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCHHHHHHH
IVRRIEQVVIFGNVALTTPVMQYCLQNEIPVTFLSQHGKYFGRLEATTADNAEMQRFHFL
HHHHHHHHHEECCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHH
RSIDEPFALETARSIVAAKISNSKTMIRRRKTVVQDRDSTLQNKMAYNLDIMADLALKAE
HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
ASTDIDALRGIEGKASALYFECYGMLFSKNLPFHTRSFLRVRRPPTDPVNSLLSFGYTML
CCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
HTNIFSMVQASGLNPYIGFLHAERKGNPALVNDLVEEFRTIVDSLVLYTLNRGLLQEKDF
HHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYRKDEPGCFLSNDARKRFLNIFETRMWQESRDGCTGKTLNFRRHIEKQVRIMREVIAGT
CEECCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
RTQYDPYKLPV
CCCCCCCCCCC
>Mature Secondary Structure 
GWLYNQMAMPETIFQAWYKVASNDGRPGWDNTSIQDYSLRLEENLKSLSHALLTGTYRQ
CCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPLLKLVMLKPDGKERVLLIPGVIDRVAQTAASIVLSPIIEAELGNCTFAYRPGISREGA
CCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
AREIDRLHREGYQWVLDADIRNFFDNVRHDLLFQRLVELVDDKEMISLLHRWLTAEIVDG
HHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
LNPRTRNTMGLPQGCPISPALANLYLDRFDETMEQQGFKLVRFADDYLVLCKTRPKAEAA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHH
LKLSESALAELKLELHSDKTRITTFAEGFKYLGYLFIRSLVIPTKMHPEEWYDKLGKFRL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RKKSVHALPADPETMTGETSQFELETDQGEKIELSKEELLQTEFGKKLLESLDKKQLNVD
HHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHH
EFLEKISRQDEERQKEKREALKKLYSPFLNTLYLQEQGSLMRKDGERFSIEKDGSVINEV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCHHHHHHH
IVRRIEQVVIFGNVALTTPVMQYCLQNEIPVTFLSQHGKYFGRLEATTADNAEMQRFHFL
HHHHHHHHHEECCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHH
RSIDEPFALETARSIVAAKISNSKTMIRRRKTVVQDRDSTLQNKMAYNLDIMADLALKAE
HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
ASTDIDALRGIEGKASALYFECYGMLFSKNLPFHTRSFLRVRRPPTDPVNSLLSFGYTML
CCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
HTNIFSMVQASGLNPYIGFLHAERKGNPALVNDLVEEFRTIVDSLVLYTLNRGLLQEKDF
HHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYRKDEPGCFLSNDARKRFLNIFETRMWQESRDGCTGKTLNFRRHIEKQVRIMREVIAGT
CEECCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
RTQYDPYKLPV
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]