| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is rmlA1 [H]
Identifier: 119357791
GI number: 119357791
Start: 2312809
End: 2313708
Strand: Reverse
Name: rmlA1 [H]
Synonym: Cpha266_1998
Alternate gene names: 119357791
Gene position: 2313708-2312809 (Counterclockwise)
Preceding gene: 119357792
Following gene: 119357790
Centisome position: 73.83
GC content: 48.33
Gene sequence:
>900_bases ATGAAAGGAATAATTCTTGCCGGCGGTTCAGGGACACGCCTTTATCCGATAACGAGGGGTATTTCAAAACAGCTTCTGCC GGTATACGACAAACCCATGATTTATTATCCCCTCAGTACCTTGATGCTGGGGGGAATCAATGATATCCTTATTATTTCAA CACCCGAAGATCTGCCTTTGTTTCAGCGTCTGCTGGGAGATGGCAGCGGTTGGGGAATATCGCTTTCCTACAAGGCTCAA CCATCGCCTGACGGGCTGGCGCAGGCTTTTATTCTTGGTGAAGCGTTTATCGGTTCGGATTCGGTTTGTCTGATTCTCGG CGATAACATTTTTTTTGGATATGGTTTCAGTTCCATGCTTGATGATGCGGTGAGGATCGTTGAGGAAGAGGCCAAGGCAA CCATTTTTGGCTACTATGTCCGTGATCCTGAGCGGTATGGCGTGGCGGAATTTGATGAATCCGGCCAGGTGATCTCTCTT GAAGAGAAGCCTCTGGCTCCCAAATCGAATTATGCCGTTGTCGGGCTCTATTTTTATGACAATTCCGTTGTTGAGATTGC AAAAACCATTAAACCTTCTGATAGAGGCGAGCTCGAGATCACGTCGGTGAATGAAGAGTATCTGAAACGACGGAAGCTTC GTCTTTCAATTCTCGGGCGAGGTTTTGCCTGGCTTGATACCGGTACGCACGACTCTTATCAGGAAGCCGGTCACTTTATC GAGACGGTGGAAAAAAGACAGGGACTGAAGATTGCATGCCCTGAAGAAATTGCATGGCGAAAAGGATGGATCGACGATCG GCAGCTCAGGGAACTTGCCGCTCCGCTTCTGAAAAATCAGTACGGAGCCTATCTTGTTGAACTGCTTGATCGCAAGGACG AGTATACCCGGCACCATTGA
Upstream 100 bases:
>100_bases AAAGCGTATATTAAAGCGCTGTATTTTACATCTTTTTCTTCGCTGTCGTCAGTGCTGTTTTGTTAGCCTTGTATTTTTCC ATCATGATAGTTCTATCGAA
Downstream 100 bases:
>100_bases TGCGGGGACTAAACCGTGAGCGATCTGCTGTGTCGTGATAGCGAGCGCAATTGGTATGCCGTTTGCACGACAGGTGTTAT TGTAATTCTATTCTTTTATC
Product: glucose-1-phosphate thymidylyltransferase
Products: NA
Alternate protein names: G1P-TT 1; dTDP-glucose pyrophosphorylase 1; dTDP-glucose synthase 1 [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MKGIILAGGSGTRLYPITRGISKQLLPVYDKPMIYYPLSTLMLGGINDILIISTPEDLPLFQRLLGDGSGWGISLSYKAQ PSPDGLAQAFILGEAFIGSDSVCLILGDNIFFGYGFSSMLDDAVRIVEEEAKATIFGYYVRDPERYGVAEFDESGQVISL EEKPLAPKSNYAVVGLYFYDNSVVEIAKTIKPSDRGELEITSVNEEYLKRRKLRLSILGRGFAWLDTGTHDSYQEAGHFI ETVEKRQGLKIACPEEIAWRKGWIDDRQLRELAAPLLKNQYGAYLVELLDRKDEYTRHH
Sequences:
>Translated_299_residues MKGIILAGGSGTRLYPITRGISKQLLPVYDKPMIYYPLSTLMLGGINDILIISTPEDLPLFQRLLGDGSGWGISLSYKAQ PSPDGLAQAFILGEAFIGSDSVCLILGDNIFFGYGFSSMLDDAVRIVEEEAKATIFGYYVRDPERYGVAEFDESGQVISL EEKPLAPKSNYAVVGLYFYDNSVVEIAKTIKPSDRGELEITSVNEEYLKRRKLRLSILGRGFAWLDTGTHDSYQEAGHFI ETVEKRQGLKIACPEEIAWRKGWIDDRQLRELAAPLLKNQYGAYLVELLDRKDEYTRHH >Mature_299_residues MKGIILAGGSGTRLYPITRGISKQLLPVYDKPMIYYPLSTLMLGGINDILIISTPEDLPLFQRLLGDGSGWGISLSYKAQ PSPDGLAQAFILGEAFIGSDSVCLILGDNIFFGYGFSSMLDDAVRIVEEEAKATIFGYYVRDPERYGVAEFDESGQVISL EEKPLAPKSNYAVVGLYFYDNSVVEIAKTIKPSDRGELEITSVNEEYLKRRKLRLSILGRGFAWLDTGTHDSYQEAGHFI ETVEKRQGLKIACPEEIAWRKGWIDDRQLRELAAPLLKNQYGAYLVELLDRKDEYTRHH
Specific function: Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis [H]
COG id: COG1209
COG function: function code M; dTDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-1-phosphate thymidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788351, Length=287, Percent_Identity=67.2473867595819, Blast_Score=414, Evalue=1e-117, Organism=Escherichia coli, GI1790224, Length=289, Percent_Identity=67.4740484429066, Blast_Score=397, Evalue=1e-112, Organism=Caenorhabditis elegans, GI133931050, Length=232, Percent_Identity=25.8620689655172, Blast_Score=74, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6320148, Length=265, Percent_Identity=26.7924528301887, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI21355443, Length=236, Percent_Identity=24.5762711864407, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24644084, Length=236, Percent_Identity=24.5762711864407, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005907 - InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.24 [H]
Molecular weight: Translated: 33532; Mature: 33532
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGIILAGGSGTRLYPITRGISKQLLPVYDKPMIYYPLSTLMLGGINDILIISTPEDLPL CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHCCCCCEEEEECCCCCHH FQRLLGDGSGWGISLSYKAQPSPDGLAQAFILGEAFIGSDSVCLILGDNIFFGYGFSSML HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCCCEEEEEECCEEEECCHHHHH DDAVRIVEEEAKATIFGYYVRDPERYGVAEFDESGQVISLEEKPLAPKSNYAVVGLYFYD HHHHHHHHHHCCEEEEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEEEEC NSVVEIAKTIKPSDRGELEITSVNEEYLKRRKLRLSILGRGFAWLDTGTHDSYQEAGHFI CCHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHEEEEECCCEEEEECCCCCCHHHHHHHH ETVEKRQGLKIACPEEIAWRKGWIDDRQLRELAAPLLKNQYGAYLVELLDRKDEYTRHH HHHHHHCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCC >Mature Secondary Structure MKGIILAGGSGTRLYPITRGISKQLLPVYDKPMIYYPLSTLMLGGINDILIISTPEDLPL CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHCCCCCEEEEECCCCCHH FQRLLGDGSGWGISLSYKAQPSPDGLAQAFILGEAFIGSDSVCLILGDNIFFGYGFSSML HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCCCEEEEEECCEEEECCHHHHH DDAVRIVEEEAKATIFGYYVRDPERYGVAEFDESGQVISLEEKPLAPKSNYAVVGLYFYD HHHHHHHHHHCCEEEEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEEEEC NSVVEIAKTIKPSDRGELEITSVNEEYLKRRKLRLSILGRGFAWLDTGTHDSYQEAGHFI CCHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHEEEEECCCEEEEECCCCCCHHHHHHHH ETVEKRQGLKIACPEEIAWRKGWIDDRQLRELAAPLLKNQYGAYLVELLDRKDEYTRHH HHHHHHCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7517391; 9097040; 9278503; 7517390 [H]