Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 119357743

GI number: 119357743

Start: 2259035

End: 2260270

Strand: Direct

Name: tnpA [H]

Synonym: Cpha266_1949

Alternate gene names: 119357743

Gene position: 2259035-2260270 (Clockwise)

Preceding gene: 119357740

Following gene: 119357751

Centisome position: 72.08

GC content: 47.09

Gene sequence:

>1236_bases
ATGCCCCCTTTGCCAAGTCTTACGAGCCACTACCACCAATTGTTGGGTCTTCCTCCAAACTGGAATGTTGAGAACGTTAC
CTTATCGATCACGGGCAAGCAGATCGAGATCCGACTGGTTTATACCGACAAACAAGCTGAGTGTCCGGAATGCGGTCAAT
TATGCAAAATCTATGATCATACCAGTGAGCAACAGTGGCGTCATCTGGATACAATGCAGTTTGAGACGATCATTGTGGCT
CGTTTACCCCGATGCAAATGCAAAGAACATGGGGTTAAAACCGTCAGGGTACCTTGGGCTGCAAGGCATTCGCGTTTCAC
CCTGATGTTCGAAAGCTTTGCCATTGAACTGTTGATGCACTGCTCGAGCATCAAGGCGGCGTCAAGTATGCTGAATTTAA
ACTGGCATGCCGTTGATGAAATCATGCGTCGAGCCGTCAAGCGTGGTCTGAATCGTCGGGAATCCGAAGCTATCGCATAT
CTGGGTATCGATAAAAAAAGCTTTAAGGCTGGTCAGCATTATGTGACGACCCTGAATGATCTGGATAAAGGCCGTGTACT
TGAAGTGGTTGAACATCGAACCAACGAGGCAGCCAAAGCGTTGCTTGAATCACTGAACAAGAAGCAGCAAGAACAGGTTA
AAGCGGTATCGGCTGACATGTGGAAGCCCTATGCCAATGCCGTTGAAGAGCTGTTACCAAATGCTGATCTGGTGCATGAT
CGTTTTCATATCAGCAAGTATCTCAGTGAAGCTGTAGATGCGGTGCGCCGCAAGGAATCCCGTGAATTGGATCAAGCCGG
TGATAAGCGACTGGTTGGCTCGAAATATGTCTGGCTGCGCAATCCGGAAAACATGCGCGAACAACAAAAGGTCGAATTGA
GCAACCTGATGGCCTGTGAATTCAAAACCAGTCAGGCATGGGCATTGAAAAACATGTTTCGGTACTTCTGGCAGCTTGGC
GACACCGATGGTGCAAGTTTCTTTTTTGAATACTGGTCGAGGCGGGTCGATGAGGTAGGCCTAACTCCGTTGATCGAGGT
CAAAGAACTGCTTCAGAGGCATTTCGACCATATTCTGACATATTTTAAACACGCCATTACCAATGCAGTTTCCGAAGGAT
TAAACAGCAAAATTCAGATTGTCAAAGCTTCAGCACGGGGATTTCACCGATTCGAGAGTTATCGAAACCGGATTTTGTTT
TATTGCGGTAAACTCAATATGGCGATCAGTTCATGA

Upstream 100 bases:

>100_bases
AAGTCAACGGCTCTTTGCAGATTATCGTGGAAAAATGTGGGTCAATGGGTAACTTGGCGTAATTCTGATTCCTATCCAAA
AAAAGCGATTCTCTTTGCTT

Downstream 100 bases:

>100_bases
CGTAATGGCAGTTGGGCTTTCCACGAAATTCTGCGAAGAACCCTCCAATGCTTTGAGCGCAAGCAGGTTGTCTCCTTGAA
TCAGCATGTTGCCGGTATTC

Product: transposase, IS204/IS1001/IS1096/IS1165 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MPPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDKQAECPECGQLCKIYDHTSEQQWRHLDTMQFETIIVA
RLPRCKCKEHGVKTVRVPWAARHSRFTLMFESFAIELLMHCSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAY
LGIDKKSFKAGQHYVTTLNDLDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHD
RFHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACEFKTSQAWALKNMFRYFWQLG
DTDGASFFFEYWSRRVDEVGLTPLIEVKELLQRHFDHILTYFKHAITNAVSEGLNSKIQIVKASARGFHRFESYRNRILF
YCGKLNMAISS

Sequences:

>Translated_411_residues
MPPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDKQAECPECGQLCKIYDHTSEQQWRHLDTMQFETIIVA
RLPRCKCKEHGVKTVRVPWAARHSRFTLMFESFAIELLMHCSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAY
LGIDKKSFKAGQHYVTTLNDLDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHD
RFHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACEFKTSQAWALKNMFRYFWQLG
DTDGASFFFEYWSRRVDEVGLTPLIEVKELLQRHFDHILTYFKHAITNAVSEGLNSKIQIVKASARGFHRFESYRNRILF
YCGKLNMAISS
>Mature_410_residues
PPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDKQAECPECGQLCKIYDHTSEQQWRHLDTMQFETIIVAR
LPRCKCKEHGVKTVRVPWAARHSRFTLMFESFAIELLMHCSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAYL
GIDKKSFKAGQHYVTTLNDLDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHDR
FHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACEFKTSQAWALKNMFRYFWQLGD
TDGASFFFEYWSRRVDEVGLTPLIEVKELLQRHFDHILTYFKHAITNAVSEGLNSKIQIVKASARGFHRFESYRNRILFY
CGKLNMAISS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 47678; Mature: 47547

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDKQAECPECGQLCKIYDH
CCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHC
TSEQQWRHLDTMQFETIIVARLPRCKCKEHGVKTVRVPWAARHSRFTLMFESFAIELLMH
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCHHCCCHHHHHHHHHHHHHHHH
CSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAYLGIDKKSFKAGQHYVTTLND
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHC
LDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHD
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
RFHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEE
FKTSQAWALKNMFRYFWQLGDTDGASFFFEYWSRRVDEVGLTPLIEVKELLQRHFDHILT
ECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
YFKHAITNAVSEGLNSKIQIVKASARGFHRFESYRNRILFYCGKLNMAISS
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCEEEEECCCCCEECC
>Mature Secondary Structure 
PPLPSLTSHYHQLLGLPPNWNVENVTLSITGKQIEIRLVYTDKQAECPECGQLCKIYDH
CCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHC
TSEQQWRHLDTMQFETIIVARLPRCKCKEHGVKTVRVPWAARHSRFTLMFESFAIELLMH
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCHHCCCHHHHHHHHHHHHHHHH
CSSIKAASSMLNLNWHAVDEIMRRAVKRGLNRRESEAIAYLGIDKKSFKAGQHYVTTLND
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHC
LDKGRVLEVVEHRTNEAAKALLESLNKKQQEQVKAVSADMWKPYANAVEELLPNADLVHD
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
RFHISKYLSEAVDAVRRKESRELDQAGDKRLVGSKYVWLRNPENMREQQKVELSNLMACE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEE
FKTSQAWALKNMFRYFWQLGDTDGASFFFEYWSRRVDEVGLTPLIEVKELLQRHFDHILT
ECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
YFKHAITNAVSEGLNSKIQIVKASARGFHRFESYRNRILFYCGKLNMAISS
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]