Click here to switch to the map view.

The map label for this gene is 119357533

Identifier: 119357533

GI number: 119357533

Start: 1961687

End: 1962115

Strand: Reverse

Name: 119357533

Synonym: Cpha266_1736

Alternate gene names: NA

Gene position: 1962115-1961687 (Counterclockwise)

Preceding gene: 119357534

Following gene: 119357532

Centisome position: 62.61

GC content: 45.45

Gene sequence:

>429_bases
ATGACTATGCCGTTGCAGATTTATAACACGACCAGAAGAGAGCTTGCCGAATCGGTTTTGACTGAAGTGGTCACGACGGT
TTTGCAGGAAGAGGGTTTTCTTATTGAGTCTCTTGTTGCCGTCTATTGCGGCAACAAAATGATTCATCGCATCAACCGAG
AGTTTTTGGGGCACGATTATCCTACAGACACCATTACCTTTTCCTACAGCAAGGGTTCTGAAATTGACGGAGAGTTCTAT
ATCTCTCTGGATGCTGTTGAAGAGAATGCTCTGCGTTACAAGGTCGGTTTTGACGAAGAGCTCATGCGCGTCACCATCCA
TTCAGCGCTGCATCTTGCGGGATATCAGGATGGAAAAGACGAAGAACGGGTGCAAATGCAGGAAAAAGAAGCTTTATATC
TCAAGCGTTTTGTTACGCCATCAACCTAA

Upstream 100 bases:

>100_bases
GTCAGCAAACGGTATCTTGATGAAGATGTGGAGCTGACGTTCAGAGTGCATAAAAACAGCCTCAAACATATTGACGCGTT
GATCAAGCCACTACTGATTC

Downstream 100 bases:

>100_bases
ACTCCTCAATTTATGGACAGCATCCGCAACGAGGGATCTTCGGCAAAGCGTATGTCTACAGGACGCCGGTTGCTTGTTAT
CGGCATTCCTGTGCTTCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTMPLQIYNTTRRELAESVLTEVVTTVLQEEGFLIESLVAVYCGNKMIHRINREFLGHDYPTDTITFSYSKGSEIDGEFY
ISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEERVQMQEKEALYLKRFVTPST

Sequences:

>Translated_142_residues
MTMPLQIYNTTRRELAESVLTEVVTTVLQEEGFLIESLVAVYCGNKMIHRINREFLGHDYPTDTITFSYSKGSEIDGEFY
ISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEERVQMQEKEALYLKRFVTPST
>Mature_141_residues
TMPLQIYNTTRRELAESVLTEVVTTVLQEEGFLIESLVAVYCGNKMIHRINREFLGHDYPTDTITFSYSKGSEIDGEFYI
SLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEERVQMQEKEALYLKRFVTPST

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLPD (A1BH76)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_912177.1
- ProteinModelPortal:   A1BH76
- SMR:   A1BH76
- STRING:   A1BH76
- GeneID:   4571098
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_1736
- NMPDR:   fig|290317.7.peg.1819
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   IDGEFYI
- ProtClustDB:   CLSK637735
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16366; Mature: 16235

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMPLQIYNTTRRELAESVLTEVVTTVLQEEGFLIESLVAVYCGNKMIHRINREFLGHDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
PTDTITFSYSKGSEIDGEFYISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKD
CCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
EERVQMQEKEALYLKRFVTPST
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TMPLQIYNTTRRELAESVLTEVVTTVLQEEGFLIESLVAVYCGNKMIHRINREFLGHDY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
PTDTITFSYSKGSEIDGEFYISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKD
CCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
EERVQMQEKEALYLKRFVTPST
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA