| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357379
Identifier: 119357379
GI number: 119357379
Start: 1792935
End: 1793858
Strand: Reverse
Name: 119357379
Synonym: Cpha266_1577
Alternate gene names: NA
Gene position: 1793858-1792935 (Counterclockwise)
Preceding gene: 119357380
Following gene: 119357378
Centisome position: 57.24
GC content: 49.78
Gene sequence:
>924_bases ATGATTTCCGAAGATATAATGAACCGTAATAAGCAAATACCGGCAGCATGTTATCCATGTATTTTCGAACAGTTGCATTC GCTTGCAATGGTTACCGGACTTGAAGGTGATGGAGAGAAACTGCTGTTCGAACACTCAATGCTACATCTTCTCGCTACTC ATGGCGAAGGGCTCGTTGTACAGCATATCATCAGGAGTGCCACTGACAGGGCGATCGCCCTGTCAGGAAAAGTGGGTGAT TACGATCCTTACGGAGCGATAAAAAAACAGTCCAACGACATTGCCCGCCAGTTTGCCGGTGAGTTCAGGAACAAAATCCG GCGTTCTTCCGAACCGTTGCGGGTTGCGGTTAAAATTGCTGCCGCTGGCAATATCATCGATTTTGGTGCCAAGCGGCACG GATCGCTCGATGTTGAAAAGGAGCTTTGCACTATCGATGAACGGGCATTCGGGTGTTTCGATTTTGCGGAGTTCTCGACA CGCTTGAAATTGGCCGGAAAACTGCTTTATATTTGCGACAATGCCGGAGAGATCGTTTTTGACAGGTTGTTCATCGAGGA GATCCTGCGCACTAATCCCGGACTTGAGGTTACCTGTGCCGTCAGGGCTTTGCCGGTCATCAACGATGCGGTTCTCGCCG ATGCGCATGATGCGGGACTGGATGAGGTGGCAGTCGTTGTCTCTTCCGGCAGCGTGTATCCAGGAACTCTGCTTGATGAA ACATCCGAAGAGTTCAGAATGCTGTTCGACAACGCCGATGTGATTATTTCGAAAGGACAGGGGAATTTCGAAACGCTGCT TGATATCGCCGATGAACGTCTCTTTTTTATCCTGAGAATCAAGTGCGACCAGATGGCGAGGCTCTCCAGTGTAGCCAAAG GGGAACTTGTTCTCATGCAAGGCGGGAAGGTCAGGTCGACATAA
Upstream 100 bases:
>100_bases AGCCGTTTTTTTTCTGAAAAGCTTTTCTTCTCTGATGTTGCTGCGGAATAACGTTAGATTACTTGAGCCTTGTTCCCTGT TTTTAAAATGATAAAGACCT
Downstream 100 bases:
>100_bases GTGGCGTGTTTTACGCAAAAGGATCGATCTGATTGGATGTTTCAGATGATTTATAGCGGCACATGATTCGCTGCAGCATC TCTGCGTGCGGCTGCCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MISEDIMNRNKQIPAACYPCIFEQLHSLAMVTGLEGDGEKLLFEHSMLHLLATHGEGLVVQHIIRSATDRAIALSGKVGD YDPYGAIKKQSNDIARQFAGEFRNKIRRSSEPLRVAVKIAAAGNIIDFGAKRHGSLDVEKELCTIDERAFGCFDFAEFST RLKLAGKLLYICDNAGEIVFDRLFIEEILRTNPGLEVTCAVRALPVINDAVLADAHDAGLDEVAVVVSSGSVYPGTLLDE TSEEFRMLFDNADVIISKGQGNFETLLDIADERLFFILRIKCDQMARLSSVAKGELVLMQGGKVRST
Sequences:
>Translated_307_residues MISEDIMNRNKQIPAACYPCIFEQLHSLAMVTGLEGDGEKLLFEHSMLHLLATHGEGLVVQHIIRSATDRAIALSGKVGD YDPYGAIKKQSNDIARQFAGEFRNKIRRSSEPLRVAVKIAAAGNIIDFGAKRHGSLDVEKELCTIDERAFGCFDFAEFST RLKLAGKLLYICDNAGEIVFDRLFIEEILRTNPGLEVTCAVRALPVINDAVLADAHDAGLDEVAVVVSSGSVYPGTLLDE TSEEFRMLFDNADVIISKGQGNFETLLDIADERLFFILRIKCDQMARLSSVAKGELVLMQGGKVRST >Mature_307_residues MISEDIMNRNKQIPAACYPCIFEQLHSLAMVTGLEGDGEKLLFEHSMLHLLATHGEGLVVQHIIRSATDRAIALSGKVGD YDPYGAIKKQSNDIARQFAGEFRNKIRRSSEPLRVAVKIAAAGNIIDFGAKRHGSLDVEKELCTIDERAFGCFDFAEFST RLKLAGKLLYICDNAGEIVFDRLFIEEILRTNPGLEVTCAVRALPVINDAVLADAHDAGLDEVAVVVSSGSVYPGTLLDE TSEEFRMLFDNADVIISKGQGNFETLLDIADERLFFILRIKCDQMARLSSVAKGELVLMQGGKVRST
Specific function: Unknown
COG id: COG1578
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002791 - InterPro: IPR014444 [H]
Pfam domain/function: PF01937 DUF89 [H]
EC number: NA
Molecular weight: Translated: 33740; Mature: 33740
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00047 HISTONE_H4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISEDIMNRNKQIPAACYPCIFEQLHSLAMVTGLEGDGEKLLFEHSMLHLLATHGEGLVV CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH QHIIRSATDRAIALSGKVGDYDPYGAIKKQSNDIARQFAGEFRNKIRRSSEPLRVAVKIA HHHHHHCCCCEEEEECCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE AAGNIIDFGAKRHGSLDVEKELCTIDERAFGCFDFAEFSTRLKLAGKLLYICDNAGEIVF ECCCEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCHHHH DRLFIEEILRTNPGLEVTCAVRALPVINDAVLADAHDAGLDEVAVVVSSGSVYPGTLLDE HHHHHHHHHHCCCCCEEEEEEEECCHHCHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC TSEEFRMLFDNADVIISKGQGNFETLLDIADERLFFILRIKCDQMARLSSVAKGELVLMQ CHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEEECHHHHHHHHHHCCCCEEEEE GGKVRST CCCCCCC >Mature Secondary Structure MISEDIMNRNKQIPAACYPCIFEQLHSLAMVTGLEGDGEKLLFEHSMLHLLATHGEGLVV CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH QHIIRSATDRAIALSGKVGDYDPYGAIKKQSNDIARQFAGEFRNKIRRSSEPLRVAVKIA HHHHHHCCCCEEEEECCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE AAGNIIDFGAKRHGSLDVEKELCTIDERAFGCFDFAEFSTRLKLAGKLLYICDNAGEIVF ECCCEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCHHHH DRLFIEEILRTNPGLEVTCAVRALPVINDAVLADAHDAGLDEVAVVVSSGSVYPGTLLDE HHHHHHHHHHCCCCCEEEEEEEECCHHCHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHC TSEEFRMLFDNADVIISKGQGNFETLLDIADERLFFILRIKCDQMARLSSVAKGELVLMQ CHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEEECHHHHHHHHHHCCCCEEEEE GGKVRST CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]