| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357330
Identifier: 119357330
GI number: 119357330
Start: 1735748
End: 1736404
Strand: Reverse
Name: 119357330
Synonym: Cpha266_1528
Alternate gene names: NA
Gene position: 1736404-1735748 (Counterclockwise)
Preceding gene: 119357331
Following gene: 119357329
Centisome position: 55.41
GC content: 44.75
Gene sequence:
>657_bases ATGTCTCTGCTTGAAAAAATCAGTACATCGACCTGTTCGTTGCGTCTAAAAAACGACTGGTTGAAAATTTTCACATGTCC GATTCCCTCTTCTGATTTTCTCTCTTTTGTCGGAGTCGCAACGATGGATGCTCCCCAGCATGCCGTTCTTGCGCTCCTGT ACGATGTCGATGTTGCCACCCAATGGGTCTGGAAAACAAGAGAGATGAAAGTCCTCAAAGAGTTGTCTGAAGATGAGGGG AGAATTGTCTATCAGCTTGTAAGCGCACCCTGGCCTGTATCTGACAGAGAGATTATCACATTGTCCCAGGGATATATAGA TCCTGAGACATCTGAAGTTTTTATCAAGCTTGAGTGCAGACCCGATTACCTGCCTTTAAACGACAAGTATGTCAGGGTTC CACAGCTTGAAGGAGCATGGAATATCATTCCCCTTTCTGAAAATCAGTGCCGTGTGGTTTTCAGACTCCATATAGAGCCC GGCGGCGAAATTCCTGCATGGCTTGCCAACATCGCTGTTATTGATACTCCGTTTCATACCATGAACAATATGCGGGAGTG GGTGAAAAAAGAGAAGTATCAGAATCCCGTGGATGCTCCCTTCAAAAAATCGTCACGGGATGTTATCAAACAATACGATC AGTTTATAACTGAGTAA
Upstream 100 bases:
>100_bases ATCAGATCCTCTTGTGAAATTTTCTTCTCAAGTTCCTGTTACTCTTGTTCGCTGATCAGGATGCGGCCTTTCATTTTTTT AATCAAAACTACGGCATGCT
Downstream 100 bases:
>100_bases GCGCAGTTTACGTGGTGAGGTATTTTAAGTCATACAAATATCATCAGGTATGGATGTACATTCAGCTCTTAACGTGAACT GGACGTTTCGTATAGAACAT
Product: cyclase/dehydrase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MSLLEKISTSTCSLRLKNDWLKIFTCPIPSSDFLSFVGVATMDAPQHAVLALLYDVDVATQWVWKTREMKVLKELSEDEG RIVYQLVSAPWPVSDREIITLSQGYIDPETSEVFIKLECRPDYLPLNDKYVRVPQLEGAWNIIPLSENQCRVVFRLHIEP GGEIPAWLANIAVIDTPFHTMNNMREWVKKEKYQNPVDAPFKKSSRDVIKQYDQFITE
Sequences:
>Translated_218_residues MSLLEKISTSTCSLRLKNDWLKIFTCPIPSSDFLSFVGVATMDAPQHAVLALLYDVDVATQWVWKTREMKVLKELSEDEG RIVYQLVSAPWPVSDREIITLSQGYIDPETSEVFIKLECRPDYLPLNDKYVRVPQLEGAWNIIPLSENQCRVVFRLHIEP GGEIPAWLANIAVIDTPFHTMNNMREWVKKEKYQNPVDAPFKKSSRDVIKQYDQFITE >Mature_217_residues SLLEKISTSTCSLRLKNDWLKIFTCPIPSSDFLSFVGVATMDAPQHAVLALLYDVDVATQWVWKTREMKVLKELSEDEGR IVYQLVSAPWPVSDREIITLSQGYIDPETSEVFIKLECRPDYLPLNDKYVRVPQLEGAWNIIPLSENQCRVVFRLHIEPG GEIPAWLANIAVIDTPFHTMNNMREWVKKEKYQNPVDAPFKKSSRDVIKQYDQFITE
Specific function: May play a role in the interaction of the bacterium with animal cells [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 START domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002913 [H]
Pfam domain/function: PF01852 START [H]
EC number: NA
Molecular weight: Translated: 25177; Mature: 25046
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS50848 START
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLEKISTSTCSLRLKNDWLKIFTCPIPSSDFLSFVGVATMDAPQHAVLALLYDVDVAT CCHHHHHCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QWVWKTREMKVLKELSEDEGRIVYQLVSAPWPVSDREIITLSQGYIDPETSEVFIKLECR HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC PDYLPLNDKYVRVPQLEGAWNIIPLSENQCRVVFRLHIEPGGEIPAWLANIAVIDTPFHT CCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCCHHHHHEEEEEECCHHH MNNMREWVKKEKYQNPVDAPFKKSSRDVIKQYDQFITE HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SLLEKISTSTCSLRLKNDWLKIFTCPIPSSDFLSFVGVATMDAPQHAVLALLYDVDVAT CHHHHHCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QWVWKTREMKVLKELSEDEGRIVYQLVSAPWPVSDREIITLSQGYIDPETSEVFIKLECR HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC PDYLPLNDKYVRVPQLEGAWNIIPLSENQCRVVFRLHIEPGGEIPAWLANIAVIDTPFHT CCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCCHHHHHEEEEEECCHHH MNNMREWVKKEKYQNPVDAPFKKSSRDVIKQYDQFITE HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 11276083 [H]