| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119357266
Identifier: 119357266
GI number: 119357266
Start: 1659429
End: 1660115
Strand: Reverse
Name: 119357266
Synonym: Cpha266_1458
Alternate gene names: NA
Gene position: 1660115-1659429 (Counterclockwise)
Preceding gene: 119357267
Following gene: 119357265
Centisome position: 52.97
GC content: 53.86
Gene sequence:
>687_bases ATGGCAAGGCCTGTAAAATGCAGAAAGATAGGGTGTGATCCGGAGTTTCGGCTTTTCAAGCCCGCAGGAGTTCCGGCAAC CTTGCTTGAAACCGTCGATCTTTCGTTTGATGAGTTCGAAGCGATCCGGCTTGCGGACTTCGAGGGATTGTATCAGGAGG CCGCGGCTCAGCAGATGCATGTTTCCCGTCAGACATTTGGCAATATTATCGCATCGGCTCGCCACAAGGTGAGTCAGATG CTCGTTTCAGGAAAACAGTTAACCGTAACAGGAGGAACTATCATGGTTACAAGTGAAGAAAGAGTATTTAAGTGCGCAAC ATGCTCTCACAAGTGGAGCGTTGCATATGGAGCTGCCAGACCGGCGGCCTGTCCATCGTGTGGGGGAGTAAATATTCATC GACTCTCGTCTGATGGCAGTTTTGGCGGTGGACGCCATGGCGCTGGTAAATGTCGGGGCCTTCGTACCGGACTGAATCGT GAGGTCTTGGGAGATGGTTCAGGTGCAGGCAAGAGAGATGGTCAGGGCGCTGGCGCGGGTCAGGGCCAGGGCAGAGCCCA GGGTTCAGGCAGAGGTATGGGTCAGGGCAGGGGATTGGGCCAAAGGTGCTGCGATTCCCAGGGGCATGTACATAGTCACG AGGGAGATCAGAATAACATTCAGACAGTGGAGGGTGAAAACAGATGA
Upstream 100 bases:
>100_bases AAGAGGGCCATCTGCTTGTCAGGCGGCTTTTTTTATTCTATATTATTAGCATATGCCAATAACAATGGCGAGATATGGTA TAAAAAAGTTGTGAATCGAT
Downstream 100 bases:
>100_bases AAGTTGTTATACCATTAAACGAGCCGGCAGGTCCAGCTTCACGCATGTGCGAGCATTTCGGAAGCGCCCCTTACTATGCC GTTGCCGATACTGAAACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MARPVKCRKIGCDPEFRLFKPAGVPATLLETVDLSFDEFEAIRLADFEGLYQEAAAQQMHVSRQTFGNIIASARHKVSQM LVSGKQLTVTGGTIMVTSEERVFKCATCSHKWSVAYGAARPAACPSCGGVNIHRLSSDGSFGGGRHGAGKCRGLRTGLNR EVLGDGSGAGKRDGQGAGAGQGQGRAQGSGRGMGQGRGLGQRCCDSQGHVHSHEGDQNNIQTVEGENR
Sequences:
>Translated_228_residues MARPVKCRKIGCDPEFRLFKPAGVPATLLETVDLSFDEFEAIRLADFEGLYQEAAAQQMHVSRQTFGNIIASARHKVSQM LVSGKQLTVTGGTIMVTSEERVFKCATCSHKWSVAYGAARPAACPSCGGVNIHRLSSDGSFGGGRHGAGKCRGLRTGLNR EVLGDGSGAGKRDGQGAGAGQGQGRAQGSGRGMGQGRGLGQRCCDSQGHVHSHEGDQNNIQTVEGENR >Mature_227_residues ARPVKCRKIGCDPEFRLFKPAGVPATLLETVDLSFDEFEAIRLADFEGLYQEAAAQQMHVSRQTFGNIIASARHKVSQML VSGKQLTVTGGTIMVTSEERVFKCATCSHKWSVAYGAARPAACPSCGGVNIHRLSSDGSFGGGRHGAGKCRGLRTGLNRE VLGDGSGAGKRDGQGAGAGQGQGRAQGSGRGMGQGRGLGQRCCDSQGHVHSHEGDQNNIQTVEGENR
Specific function: Unknown
COG id: COG1342
COG function: function code R; Predicted DNA-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0251 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002852 [H]
Pfam domain/function: PF02001 DUF134 [H]
EC number: NA
Molecular weight: Translated: 24001; Mature: 23870
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPVKCRKIGCDPEFRLFKPAGVPATLLETVDLSFDEFEAIRLADFEGLYQEAAAQQMH CCCCCCCEEECCCCCCEEEECCCCCHHHHHHHCCCCCHHHEEEEHHHHHHHHHHHHHHHH VSRQTFGNIIASARHKVSQMLVSGKQLTVTGGTIMVTSEERVFKCATCSHKWSVAYGAAR HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCEEEEECCCCCCEEEECCCC PAACPSCGGVNIHRLSSDGSFGGGRHGAGKCRGLRTGLNREVLGDGSGAGKRDGQGAGAG CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC QGQGRAQGSGRGMGQGRGLGQRCCDSQGHVHSHEGDQNNIQTVEGENR CCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCCEEECCCCCC >Mature Secondary Structure ARPVKCRKIGCDPEFRLFKPAGVPATLLETVDLSFDEFEAIRLADFEGLYQEAAAQQMH CCCCCCEEECCCCCCEEEECCCCCHHHHHHHCCCCCHHHEEEEHHHHHHHHHHHHHHHH VSRQTFGNIIASARHKVSQMLVSGKQLTVTGGTIMVTSEERVFKCATCSHKWSVAYGAAR HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCEEEEECCCCCCEEEECCCC PAACPSCGGVNIHRLSSDGSFGGGRHGAGKCRGLRTGLNREVLGDGSGAGKRDGQGAGAG CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC QGQGRAQGSGRGMGQGRGLGQRCCDSQGHVHSHEGDQNNIQTVEGENR CCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]