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The map label for this gene is radA [H]

Identifier: 119356823

GI number: 119356823

Start: 1134545

End: 1135915

Strand: Reverse

Name: radA [H]

Synonym: Cpha266_0996

Alternate gene names: 119356823

Gene position: 1135915-1134545 (Counterclockwise)

Preceding gene: 119356824

Following gene: 119356822

Centisome position: 36.25

GC content: 52.15

Gene sequence:

>1371_bases
ATGTCCCGTCCAGCAACACGGTATCAATGCACGCAATGCGGCGCAGTGACCCTTAAATATCAGGGGAAATGCTTCGCCTG
CCAGAGTTGGGGAACACTCCAGGAGATCATAGAGGAAACGCCGCAAAAAAAACGACAATCAACTCACGCCGGTCTGCCAC
TCCCTGAGGTTCAGCATCTGCATGATGCTGAACCTCAGGACTTTCAACGCACCATGACCGGCATCGGTGAACTCGATCGA
GTACTTGGAGGAGGGCTCATGCAGGCATCTGCTGTGCTTGTTGGAGGTGAACCCGGTATAGGCAAATCCACACTGATGCT
GCAACTTGCGCCTCGCCTTCTTCCGGAAAAAGTGCTCTATATTTCAGGAGAGGAATCGCCTAACCAGATCCGCGAACGGG
CAAAACGCCTCTCCATCAAGGCTGATAATCTTCGCCTCTTTGCCGAGGTTAACCTTGAACGGATTCTCTCGGCCATTGAA
CGCGAAAAACCGGCACTGGTCATTATCGATTCTATTCAAACCGTCTATTCGGAAGAGTATCAAAGCTCGGCAGGCACCAT
AACCCAGATCAGGGAGTGCGCTGCATCACTCATCAGGGCTGCCAAACAGCAGAATGTCATTCTCATGATCATTGGCCATA
TCACCAAGGAGGGCGCACTTGCCGGCCCTAAAACCCTTGAACATATGGTCGATACCGTTCTCCTGTTTGAAGGAGAGAAT
CACCAGCGCCACAGGATCGTCCGCTCGGTAAAAAACCGGTTCGGACCTACCAATGAGATCGGCGTTTTCCGCATGGATGA
ATCAGGCCTTCAAGAGATCCTCAACCCCTCCGAGTTTTTTATTTCCGGGAGAAGAACCGATGTTCCGGGCAACTCGATCC
TTGCAGCTCTTGAAGGTTCCAGAGCCGTACTGGTAGAAGTACAGGCCCTTGTCGCAAAAACATTCTACCCTATGCCGCAG
CGTATCGCCACAGGTTTTGATTTGAAACGGATGTCCATCATTCTTGCCGTTCTTGAAAAAAGGCTGCAGATCGCTACCTG
GGGACAGGATGTATTTGTAAAAATTGCCGGTGGCCTGAAACTCATTGAACCGGCAGCCGATCTTGCCATTGCCGCCGCCA
TTGCATCCGGCCTTATGAACCGCCCGGCTGATCCTTTAGCCGTATGTTGCGGAGAGATCGGCCTTTCGGGCGAACTCAGA
GCCATCAGCGACAGTGAACGCCGCATTCGTGAGGCGGCCCATCTCGGATTCAGCAGAATTGTTCTGCCGGAAGCCAATAC
CCGCGAACTGAAATCCTCCCTGAAAAAACTGCCGATAACCATTTCCGGCTGTAAAACGCTTCAACAGGCTTTGGAAACCC
TTGGCATCTGA

Upstream 100 bases:

>100_bases
CATAACACCCGTTCCGGGCGGAGTCGGGCCTATGACCATTGCGATGCTGTTGAAAAACACACTCCAGTCGTTCCGCCGCA
TCAACAACCTTTAGGAGGCC

Downstream 100 bases:

>100_bases
ATTTCATGCTCTCGGCAATCGCTCTGTTCACAGGGTATTTCTTTTTCCTCTCCGTCTTCTTACATTGTCACAATATGAAA
AATACAGAACAAGAACACCC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MSRPATRYQCTQCGAVTLKYQGKCFACQSWGTLQEIIEETPQKKRQSTHAGLPLPEVQHLHDAEPQDFQRTMTGIGELDR
VLGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLYISGEESPNQIRERAKRLSIKADNLRLFAEVNLERILSAIE
REKPALVIIDSIQTVYSEEYQSSAGTITQIRECAASLIRAAKQQNVILMIIGHITKEGALAGPKTLEHMVDTVLLFEGEN
HQRHRIVRSVKNRFGPTNEIGVFRMDESGLQEILNPSEFFISGRRTDVPGNSILAALEGSRAVLVEVQALVAKTFYPMPQ
RIATGFDLKRMSIILAVLEKRLQIATWGQDVFVKIAGGLKLIEPAADLAIAAAIASGLMNRPADPLAVCCGEIGLSGELR
AISDSERRIREAAHLGFSRIVLPEANTRELKSSLKKLPITISGCKTLQQALETLGI

Sequences:

>Translated_456_residues
MSRPATRYQCTQCGAVTLKYQGKCFACQSWGTLQEIIEETPQKKRQSTHAGLPLPEVQHLHDAEPQDFQRTMTGIGELDR
VLGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLYISGEESPNQIRERAKRLSIKADNLRLFAEVNLERILSAIE
REKPALVIIDSIQTVYSEEYQSSAGTITQIRECAASLIRAAKQQNVILMIIGHITKEGALAGPKTLEHMVDTVLLFEGEN
HQRHRIVRSVKNRFGPTNEIGVFRMDESGLQEILNPSEFFISGRRTDVPGNSILAALEGSRAVLVEVQALVAKTFYPMPQ
RIATGFDLKRMSIILAVLEKRLQIATWGQDVFVKIAGGLKLIEPAADLAIAAAIASGLMNRPADPLAVCCGEIGLSGELR
AISDSERRIREAAHLGFSRIVLPEANTRELKSSLKKLPITISGCKTLQQALETLGI
>Mature_455_residues
SRPATRYQCTQCGAVTLKYQGKCFACQSWGTLQEIIEETPQKKRQSTHAGLPLPEVQHLHDAEPQDFQRTMTGIGELDRV
LGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLYISGEESPNQIRERAKRLSIKADNLRLFAEVNLERILSAIER
EKPALVIIDSIQTVYSEEYQSSAGTITQIRECAASLIRAAKQQNVILMIIGHITKEGALAGPKTLEHMVDTVLLFEGENH
QRHRIVRSVKNRFGPTNEIGVFRMDESGLQEILNPSEFFISGRRTDVPGNSILAALEGSRAVLVEVQALVAKTFYPMPQR
IATGFDLKRMSIILAVLEKRLQIATWGQDVFVKIAGGLKLIEPAADLAIAAAIASGLMNRPADPLAVCCGEIGLSGELRA
ISDSERRIREAAHLGFSRIVLPEANTRELKSSLKKLPITISGCKTLQQALETLGI

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=42.9193899782135, Blast_Score=370, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49926; Mature: 49794

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPATRYQCTQCGAVTLKYQGKCFACQSWGTLQEIIEETPQKKRQSTHAGLPLPEVQHL
CCCCCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHCHHHHHHHCCCCCCCCHHHHH
HDAEPQDFQRTMTGIGELDRVLGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLY
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE
ISGEESPNQIRERAKRLSIKADNLRLFAEVNLERILSAIEREKPALVIIDSIQTVYSEEY
EECCCCHHHHHHHHHHCCCEECCEEEEEECCHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
QSSAGTITQIRECAASLIRAAKQQNVILMIIGHITKEGALAGPKTLEHMVDTVLLFEGEN
HCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEEEECCC
HQRHRIVRSVKNRFGPTNEIGVFRMDESGLQEILNPSEFFISGRRTDVPGNSILAALEGS
CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCHHHEEECCCCCCCCCCEEEEECCC
RAVLVEVQALVAKTFYPMPQRIATGFDLKRMSIILAVLEKRLQIATWGQDVFVKIAGGLK
CEEEHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
LIEPAADLAIAAAIASGLMNRPADPLAVCCGEIGLSGELRAISDSERRIREAAHLGFSRI
EECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCEE
VLPEANTRELKSSLKKLPITISGCKTLQQALETLGI
EECCCCHHHHHHHHHHCCEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRPATRYQCTQCGAVTLKYQGKCFACQSWGTLQEIIEETPQKKRQSTHAGLPLPEVQHL
CCCCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHCHHHHHHHCCCCCCCCHHHHH
HDAEPQDFQRTMTGIGELDRVLGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLY
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE
ISGEESPNQIRERAKRLSIKADNLRLFAEVNLERILSAIEREKPALVIIDSIQTVYSEEY
EECCCCHHHHHHHHHHCCCEECCEEEEEECCHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
QSSAGTITQIRECAASLIRAAKQQNVILMIIGHITKEGALAGPKTLEHMVDTVLLFEGEN
HCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEEEECCC
HQRHRIVRSVKNRFGPTNEIGVFRMDESGLQEILNPSEFFISGRRTDVPGNSILAALEGS
CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCHHHEEECCCCCCCCCCEEEEECCC
RAVLVEVQALVAKTFYPMPQRIATGFDLKRMSIILAVLEKRLQIATWGQDVFVKIAGGLK
CEEEHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
LIEPAADLAIAAAIASGLMNRPADPLAVCCGEIGLSGELRAISDSERRIREAAHLGFSRI
EECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCEE
VLPEANTRELKSSLKKLPITISGCKTLQQALETLGI
EECCCCHHHHHHHHHHCCEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]