| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is ylmA [H]
Identifier: 119356774
GI number: 119356774
Start: 1087658
End: 1088476
Strand: Direct
Name: ylmA [H]
Synonym: Cpha266_0946
Alternate gene names: 119356774
Gene position: 1087658-1088476 (Clockwise)
Preceding gene: 119356773
Following gene: 119356775
Centisome position: 34.71
GC content: 51.04
Gene sequence:
>819_bases ATGGTAGTTTCGCATCAAGAGCATCCTGATACCCGGCCTGCCATGATCGACCTGCGCAATGTAACGGTCTGTCGGGGAAG TACTCCTGCTCTTGAGGGGCTGACACTCACGATACGCGAAGGTTGTCATACCGTTGTGCTCGGACCGAACGGAGCAGGCA AGACGACGCTGATGAAGCTTCTGTCGAGTGAGCTCTATCCGGTTTATCGTAACCGGACGCATGCGAAAGTATTCGGAAGA GATCGATGGAATGTTCGGGATCTTCGCTCGCAACTCGGAATACTGTCGCACGATCTTCAACAGGACTATCTGCCGGATAC CCGTGGAATCAACGTGATTCTGTCAGGCTATTATGCAAGCATTGATATCTGGAAGCATCAGGAGTTTTCTGAGGATGCGC GCACTCATGCCGGGACGATTATGGAGTATCTCGGAGTCGGTGACCTGAAAAATCGCGCTTTCGGTTCAATGTCCACCGGA CAGCAGCGACGGTTGCTTCTTGGCAGAGCTCTGGTGAACAATCCTCGTGCGCTCCTGCTTGATGAACCTACAGCAGGGCT TGATCCCAGGGCATCGTTTCAGTACCTTTCGGCTATCAGAACGCTGATGGAGAGTGGCAAAACCGTGATTCTGGTTACGC ATCACATTCATGAAGTTCCTCCTGAAATCAATCGTGCGGTTCTCCTGAAAGCCGGACAGATTTTTGCCGATGGTCCGAAG AAAGAGGTACTCACCACAAAAAACCTTGCAGCTCTTTTTGATTACCCTTTGCGGGTGATTGAGGAAAATGGATGGTATCA CGTTATTCCTGATCGGTGA
Upstream 100 bases:
>100_bases ATGGGGCTTATGCCCTTGAGTTGCAGGCGTTCTATCTGTTTGGTTCTCTCGCCATTCTGTTTCTCGGAGCCGGACGGTAC AGTGTTCAAAAAGGTCGTAA
Downstream 100 bases:
>100_bases AAACGGCAACTGACAGGATGTTTTTTTCTGAGCATTCCGGAACTATTGTTTATCCTCGTTATGTTATCTTCAGATGCTTT TAAAGAAACCGGGCTTGCCT
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MVVSHQEHPDTRPAMIDLRNVTVCRGSTPALEGLTLTIREGCHTVVLGPNGAGKTTLMKLLSSELYPVYRNRTHAKVFGR DRWNVRDLRSQLGILSHDLQQDYLPDTRGINVILSGYYASIDIWKHQEFSEDARTHAGTIMEYLGVGDLKNRAFGSMSTG QQRRLLLGRALVNNPRALLLDEPTAGLDPRASFQYLSAIRTLMESGKTVILVTHHIHEVPPEINRAVLLKAGQIFADGPK KEVLTTKNLAALFDYPLRVIEENGWYHVIPDR
Sequences:
>Translated_272_residues MVVSHQEHPDTRPAMIDLRNVTVCRGSTPALEGLTLTIREGCHTVVLGPNGAGKTTLMKLLSSELYPVYRNRTHAKVFGR DRWNVRDLRSQLGILSHDLQQDYLPDTRGINVILSGYYASIDIWKHQEFSEDARTHAGTIMEYLGVGDLKNRAFGSMSTG QQRRLLLGRALVNNPRALLLDEPTAGLDPRASFQYLSAIRTLMESGKTVILVTHHIHEVPPEINRAVLLKAGQIFADGPK KEVLTTKNLAALFDYPLRVIEENGWYHVIPDR >Mature_272_residues MVVSHQEHPDTRPAMIDLRNVTVCRGSTPALEGLTLTIREGCHTVVLGPNGAGKTTLMKLLSSELYPVYRNRTHAKVFGR DRWNVRDLRSQLGILSHDLQQDYLPDTRGINVILSGYYASIDIWKHQEFSEDARTHAGTIMEYLGVGDLKNRAFGSMSTG QQRRLLLGRALVNNPRALLLDEPTAGLDPRASFQYLSAIRTLMESGKTVILVTHHIHEVPPEINRAVLLKAGQIFADGPK KEVLTTKNLAALFDYPLRVIEENGWYHVIPDR
Specific function: Involved In The Transport Of Molybdenum Into The Cell. Involved In Photorepair. Could Act On Uv-Induced DNA Damage Other Than Pyrimidine Dimers. [C]
COG id: COG1119
COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=31.5555555555556, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI27881501, Length=231, Percent_Identity=31.1688311688312, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI46592971, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI46592964, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI46592956, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI46592898, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI46592915, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI46592978, Length=193, Percent_Identity=31.6062176165803, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI21536376, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=28.9719626168224, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI215820660, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI20143975, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=256, Percent_Identity=28.515625, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI105990541, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=28.6384976525822, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI150417984, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=28.5067873303167, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI148612844, Length=251, Percent_Identity=28.6852589641434, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27262624, Length=246, Percent_Identity=24.7967479674797, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI27262626, Length=246, Percent_Identity=24.7967479674797, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI27436953, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9955966, Length=247, Percent_Identity=25.9109311740891, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI45243524, Length=247, Percent_Identity=25.9109311740891, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9955968, Length=247, Percent_Identity=25.9109311740891, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI11967969, Length=240, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI9961250, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI9961252, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI4505771, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786975, Length=220, Percent_Identity=35.9090909090909, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786872, Length=244, Percent_Identity=29.5081967213115, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=28.5067873303167, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=29.0748898678414, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=30.1310043668122, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=25.531914893617, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789672, Length=233, Percent_Identity=26.1802575107296, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=27.5423728813559, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790544, Length=246, Percent_Identity=26.8292682926829, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789593, Length=246, Percent_Identity=26.4227642276423, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1790467, Length=255, Percent_Identity=27.4509803921569, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=27.3092369477912, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082268, Length=230, Percent_Identity=29.1304347826087, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=222, Percent_Identity=30.6306306306306, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786803, Length=250, Percent_Identity=26, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=261, Percent_Identity=26.0536398467433, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=29.8319327731092, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786253, Length=221, Percent_Identity=29.8642533936652, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787758, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=29.2237442922374, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787105, Length=246, Percent_Identity=28.0487804878049, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=23.2142857142857, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=25.2293577981651, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788644, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790190, Length=262, Percent_Identity=24.8091603053435, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI48994997, Length=242, Percent_Identity=27.6859504132231, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788897, Length=214, Percent_Identity=24.2990654205607, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789991, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787548, Length=251, Percent_Identity=23.1075697211155, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115533608, Length=243, Percent_Identity=30.0411522633745, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71983516, Length=235, Percent_Identity=24.6808510638298, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71983510, Length=235, Percent_Identity=24.6808510638298, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71983523, Length=235, Percent_Identity=24.6808510638298, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17558664, Length=234, Percent_Identity=24.7863247863248, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17510237, Length=232, Percent_Identity=25.4310344827586, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115532730, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17539902, Length=223, Percent_Identity=26.9058295964126, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=24.8888888888889, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17552010, Length=217, Percent_Identity=23.5023041474654, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538654, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193211017, Length=219, Percent_Identity=26.9406392694064, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=219, Percent_Identity=26.9406392694064, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996809, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6320266, Length=233, Percent_Identity=25.7510729613734, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=230, Percent_Identity=28.2608695652174, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574744, Length=222, Percent_Identity=29.7297297297297, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI161076682, Length=223, Percent_Identity=28.2511210762332, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI161076684, Length=220, Percent_Identity=28.1818181818182, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581617, Length=220, Percent_Identity=28.1818181818182, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581615, Length=220, Percent_Identity=28.1818181818182, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581191, Length=217, Percent_Identity=26.7281105990783, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581189, Length=217, Percent_Identity=26.7281105990783, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581193, Length=217, Percent_Identity=26.7281105990783, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581195, Length=217, Percent_Identity=26.7281105990783, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=28.0701754385965, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=28.0701754385965, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI85724864, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580555, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85816269, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580553, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI19920532, Length=258, Percent_Identity=25.968992248062, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=258, Percent_Identity=25.968992248062, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643674, Length=237, Percent_Identity=24.4725738396624, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85726357, Length=227, Percent_Identity=27.3127753303965, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=27.2300469483568, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=27.2300469483568, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221512771, Length=237, Percent_Identity=26.5822784810127, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17136662, Length=221, Percent_Identity=26.6968325791855, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=26.1261261261261, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24659289, Length=235, Percent_Identity=24.6808510638298, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30496; Mature: 30496
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVSHQEHPDTRPAMIDLRNVTVCRGSTPALEGLTLTIREGCHTVVLGPNGAGKTTLMKL CCCCCCCCCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHH LSSELYPVYRNRTHAKVFGRDRWNVRDLRSQLGILSHDLQQDYLPDTRGINVILSGYYAS HHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE IDIWKHQEFSEDARTHAGTIMEYLGVGDLKNRAFGSMSTGQQRRLLLGRALVNNPRALLL EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE DEPTAGLDPRASFQYLSAIRTLMESGKTVILVTHHIHEVPPEINRAVLLKAGQIFADGPK ECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCEEEEECCCEEECCCC KEVLTTKNLAALFDYPLRVIEENGWYHVIPDR HHHEEHHHHHHHHHCCCEEEECCCCEEECCCC >Mature Secondary Structure MVVSHQEHPDTRPAMIDLRNVTVCRGSTPALEGLTLTIREGCHTVVLGPNGAGKTTLMKL CCCCCCCCCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHH LSSELYPVYRNRTHAKVFGRDRWNVRDLRSQLGILSHDLQQDYLPDTRGINVILSGYYAS HHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE IDIWKHQEFSEDARTHAGTIMEYLGVGDLKNRAFGSMSTGQQRRLLLGRALVNNPRALLL EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE DEPTAGLDPRASFQYLSAIRTLMESGKTVILVTHHIHEVPPEINRAVLLKAGQIFADGPK ECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCEEEEECCCEEECCCC KEVLTTKNLAALFDYPLRVIEENGWYHVIPDR HHHEEHHHHHHHHHCCCEEEECCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]