Click here to switch to the map view.

The map label for this gene is pds [H]

Identifier: 119356661

GI number: 119356661

Start: 942706

End: 944067

Strand: Reverse

Name: pds [H]

Synonym: Cpha266_0830

Alternate gene names: 119356661

Gene position: 944067-942706 (Counterclockwise)

Preceding gene: 119356664

Following gene: 119356660

Centisome position: 30.12

GC content: 49.85

Gene sequence:

>1362_bases
GTGAAAACAGCTATTTTCGGAGCAGGAGTTGCAGGGCTCAGTGCAGCAATAGAACTGGTCGAACGCGGCCATACCGTCGA
ACTATATGAAAAACGAAAGGTACTCGGCGGCAAGGTTTCTGTATGGAAAGATAACGACGGCGATTCCATCGAGTCGGGCC
TGCATATCGTTTTTGGTGGGTACGCCCAGCTTCAGAACTATCTGAAACGGGTTGGAGCTGCCGATAACTACTCATGGAAA
GCCCACTCCCTGATCTATGCCGAACCGGACGGAAAACAATCCTTCTTCAAAAAAGCAAACCTTCCAAGCCCCTGGGCCGA
AGTGGTTGGAGGACTTCAGACTGATTTTCTCACCATGTGGGACAAGATTTCGCTCCTCAAGGGGCTTTACCCTGCTCTGG
CCGGTAACGAAGCGTATTTCCGCAGCCAGGATCATATGACCTATTCGGAATGGCACAGAAAAAGAGGCGCCTCTGAACAC
TCGCTTCAGAAACTATGGCGCGCTATTGCCCTTGCCATGAACTTCATTGAACCGAATGTGATCAGCGCTCGTCCGATGAT
CACCATTTTCAAGTATTTCGGTACCGATTATGAAGCGACGAAATTTGCGTTTTTCAAAAAGAACCCGGGCGATTCAATGA
TTGAGCCGATGCGCCAGTATATCCAGAGCAAAGGCGGCCGGATTTTCGTTGATGCAAAGCTTAACCGGTTCGAACTCAAC
AGCGATGAAACCGTCAAACATGCCGTTCTTCAGGATGGGCAGATCATCGAAGCCGATGCGTTCATTTCAGCCCTTCCCGT
GCACACGGTTAAAAAAATCATTCCCAGGCCATGGCTTGCCCACAAGTATTTCAGGAACCTCCATGAATTTCAGGGAAGCC
CTGTTGCAAACTGCCAGCTCTGGTTTGACCGAAAAATCACTGATACGGATAATCTCATGTTTTCACAGGGAACGATTTTT
GCAACCTTTGCCGATGTTTCGATCACCTGTCCTGATGATTTTCAGAAGGGAAACGGCACAGCAAATGGAGGCAGCGTCAT
GAGCCTTGTGCTTGCGCCGGCACACCAACTGATGGATATGCCTAACGAGGTCATAACGGAACTGGTCATGAACGACATTC
ACGACCGCTTTCCGGCATCACGCCAGGCCAAGCTCCTGAAATCAACCATCGTCAAGATTCCTCAGTCAGTATATAAGGCT
GTACCCGATGTCGACAAGTTCCGCCCCGACCAGATAAGCCCGGTGAAAAATTTCTTCCTCGCAGGTGACTATACCGATCA
GCACTATCTCGCATCAATGGAAGGCGCTGCCCTGAGCGGAAAACTGGTGGCCGAAAAACTTCACGCAAAATTCGGATCCT
GA

Upstream 100 bases:

>100_bases
CAGAATTTCGGCAAATTTCCTTTATCGCAAAGCAACATGTATATTCGTGCGACTATCTGGATGATCGACACTTCCGCTAA
CCATAAATTACTGACCAGAG

Downstream 100 bases:

>100_bases
AAAACCTCTTTCAATTTTACCAGAAAAGCCTTTATGTAAAGGCTTTTCTGGTTTACGCCCTCCTTCTCCACAGCTCCCGA
TATGGAACGATTTAAAGCCA

Product: zeta-carotene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKTAIFGAGVAGLSAAIELVERGHTVELYEKRKVLGGKVSVWKDNDGDSIESGLHIVFGGYAQLQNYLKRVGAADNYSWK
AHSLIYAEPDGKQSFFKKANLPSPWAEVVGGLQTDFLTMWDKISLLKGLYPALAGNEAYFRSQDHMTYSEWHRKRGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYEATKFAFFKKNPGDSMIEPMRQYIQSKGGRIFVDAKLNRFELN
SDETVKHAVLQDGQIIEADAFISALPVHTVKKIIPRPWLAHKYFRNLHEFQGSPVANCQLWFDRKITDTDNLMFSQGTIF
ATFADVSITCPDDFQKGNGTANGGSVMSLVLAPAHQLMDMPNEVITELVMNDIHDRFPASRQAKLLKSTIVKIPQSVYKA
VPDVDKFRPDQISPVKNFFLAGDYTDQHYLASMEGAALSGKLVAEKLHAKFGS

Sequences:

>Translated_453_residues
MKTAIFGAGVAGLSAAIELVERGHTVELYEKRKVLGGKVSVWKDNDGDSIESGLHIVFGGYAQLQNYLKRVGAADNYSWK
AHSLIYAEPDGKQSFFKKANLPSPWAEVVGGLQTDFLTMWDKISLLKGLYPALAGNEAYFRSQDHMTYSEWHRKRGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYEATKFAFFKKNPGDSMIEPMRQYIQSKGGRIFVDAKLNRFELN
SDETVKHAVLQDGQIIEADAFISALPVHTVKKIIPRPWLAHKYFRNLHEFQGSPVANCQLWFDRKITDTDNLMFSQGTIF
ATFADVSITCPDDFQKGNGTANGGSVMSLVLAPAHQLMDMPNEVITELVMNDIHDRFPASRQAKLLKSTIVKIPQSVYKA
VPDVDKFRPDQISPVKNFFLAGDYTDQHYLASMEGAALSGKLVAEKLHAKFGS
>Mature_453_residues
MKTAIFGAGVAGLSAAIELVERGHTVELYEKRKVLGGKVSVWKDNDGDSIESGLHIVFGGYAQLQNYLKRVGAADNYSWK
AHSLIYAEPDGKQSFFKKANLPSPWAEVVGGLQTDFLTMWDKISLLKGLYPALAGNEAYFRSQDHMTYSEWHRKRGASEH
SLQKLWRAIALAMNFIEPNVISARPMITIFKYFGTDYEATKFAFFKKNPGDSMIEPMRQYIQSKGGRIFVDAKLNRFELN
SDETVKHAVLQDGQIIEADAFISALPVHTVKKIIPRPWLAHKYFRNLHEFQGSPVANCQLWFDRKITDTDNLMFSQGTIF
ATFADVSITCPDDFQKGNGTANGGSVMSLVLAPAHQLMDMPNEVITELVMNDIHDRFPASRQAKLLKSTIVKIPQSVYKA
VPDVDKFRPDQISPVKNFFLAGDYTDQHYLASMEGAALSGKLVAEKLHAKFGS

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 50701; Mature: 50701

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAIFGAGVAGLSAAIELVERGHTVELYEKRKVLGGKVSVWKDNDGDSIESGLHIVFGG
CCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECC
YAQLQNYLKRVGAADNYSWKAHSLIYAEPDGKQSFFKKANLPSPWAEVVGGLQTDFLTMW
HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
DKISLLKGLYPALAGNEAYFRSQDHMTYSEWHRKRGASEHSLQKLWRAIALAMNFIEPNV
HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
ISARPMITIFKYFGTDYEATKFAFFKKNPGDSMIEPMRQYIQSKGGRIFVDAKLNRFELN
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCEEECC
SDETVKHAVLQDGQIIEADAFISALPVHTVKKIIPRPWLAHKYFRNLHEFQGSPVANCQL
CCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEE
WFDRKITDTDNLMFSQGTIFATFADVSITCPDDFQKGNGTANGGSVMSLVLAPAHQLMDM
EECCCCCCCCCEEEECCEEEEEEECEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PNEVITELVMNDIHDRFPASRQAKLLKSTIVKIPQSVYKAVPDVDKFRPDQISPVKNFFL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCCHHHHHEE
AGDYTDQHYLASMEGAALSGKLVAEKLHAKFGS
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTAIFGAGVAGLSAAIELVERGHTVELYEKRKVLGGKVSVWKDNDGDSIESGLHIVFGG
CCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEEECCCCCHHHCCCEEEECC
YAQLQNYLKRVGAADNYSWKAHSLIYAEPDGKQSFFKKANLPSPWAEVVGGLQTDFLTMW
HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
DKISLLKGLYPALAGNEAYFRSQDHMTYSEWHRKRGASEHSLQKLWRAIALAMNFIEPNV
HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
ISARPMITIFKYFGTDYEATKFAFFKKNPGDSMIEPMRQYIQSKGGRIFVDAKLNRFELN
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCEEECC
SDETVKHAVLQDGQIIEADAFISALPVHTVKKIIPRPWLAHKYFRNLHEFQGSPVANCQL
CCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEE
WFDRKITDTDNLMFSQGTIFATFADVSITCPDDFQKGNGTANGGSVMSLVLAPAHQLMDM
EECCCCCCCCCEEEECCEEEEEEECEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PNEVITELVMNDIHDRFPASRQAKLLKSTIVKIPQSVYKAVPDVDKFRPDQISPVKNFFL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCCHHHHHEE
AGDYTDQHYLASMEGAALSGKLVAEKLHAKFGS
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]