| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is 119356379
Identifier: 119356379
GI number: 119356379
Start: 596919
End: 598754
Strand: Reverse
Name: 119356379
Synonym: Cpha266_0542
Alternate gene names: NA
Gene position: 598754-596919 (Counterclockwise)
Preceding gene: 119356380
Following gene: 119356378
Centisome position: 19.11
GC content: 46.9
Gene sequence:
>1836_bases ATGCAAGCAAAATTTCTGACGTTGTGCTGTATACTTCTTTTTTCGATCTGTCCAGCCGACGGCGAAGCCGCATCTCCGAT TAAAGCTGTTACAGCCCCGCCACCGGCTCCCGTTCATGCACAAAAACCTGAAGAAACGCTCCGCTCCGGTAAAAATCTCT TCAGAATAAAAGAGTACAGTAAAGCACAGACAATCTTTGAAACACTCCTCAAAGAGAACGGCAACCCTCAATCCAAAATC CGTCATAGCACTCTGCTCTGGCTCTCAAAAAGCCTTTTCATGCAAAAACAGCCTGAAAAAGCAGCGCAACTCCTTGAAGA ACTCCTGAAAAACCCTTCGATAAACGGCATAGATCCGGCAACGATCGTTGAAGCTCATTATGATCTTGCCGCATGCAGAT ACAAACTCGGTACACCATTGTCGGCAGCGCTTGATTTTCTCAATGTTGCGCTTTCTGCAACACCCGCCGGCATGCAGGCA ATGCAGGAGCAAGCCCTGATCAATACAAAACTCATTGCATGCACAAGCCTCGACGGCAATGCGATTGCATCGCTTGAACG GATTGCCAGAACACCCGATCTTCAGACATTCCTGCTGAACGCAAGAATGCAGAACTATCTTCAAAAGAATAACACAAACA CCTTCCTGAGCACAATCCCGCTTGTTGATCAACTCCTTCGCTCTCCGTCAATAAGCCGGGATAGCCAACAACTGATGGAA TCCCTTAAAAAGCAGGCAGCGCAGCTTTCCCTTGCGACATTCAAGGAAAGAAAAATTGGTATTCTGCTTCCTGTAGAAAT TCCTGTCTATCGCGCAGCGGAGCGATCTTCGGCAAGCAATCAGATGTTCAAGGGTATCCATCAGAGACTCCTTCGCTACC AGATGGAGCGCCCTGACATCCTGATCAGTTATTCCGTCGCCAAACCATCCGAAGGTGCAGAAAACGACCTGTTCGGCAGC ACGAAACAGCTTCTTGAAACATCCTCTCCTCTCGTCCTCATTGGCCCGATGTTCAGCAACGATGCCATTGAGGCTGCACG GGCAGCTAAAAACTCGAAAGTGCCTCTTATCACTCCGACAGCAACCGATAACCTCGTTACCGACAATAATCCATGGGCTT TTCAGTTAAACCCCACCCATGAAGAACGCGGGCGCATTGCGGCAAGGGAGCTGCTGAAAACAGGTAAACCGCAACGCGCA GCAGCAATAGCGGAAAAAACAGATAATCTGGAAGAGATGGCAAAAGGATTTCTTGACGAATTAAAACAAGCAGGAAGCAA ATCCGTTATCTATGCATCGTTCAGTGGAAAACCCGAAGATCAGAACAATCTTGCCGAGTCGCTCGGTACCCCTCCAGGAA CGTTGCTTGACGCACTTTATCTCCCCATGGATTCGCCTGAAACCATTGAAACGACTCTGCTTTTTCTTGAAAAAAACAGA ATCGGCTACAAGCGGCTTCTCGGTTCAGGGGTCTGGTCAGACCGCAAGGTTGTTGAACGATTCCGAAAAAAGATTTCAAA AGGAATTACCTTTTTCAACGACTATTCTTTTAGCGGATCAGCGATCGAAACGGTCGAAACAGCAAAGAGTCATCAAAAGT TGTGGAACACAGCACTTTCTTCTAATTTCTGGTATGGCTATGATACTATGGATTTTCTCCTGCATACCATCGACAAAAGC CCTGATCTCAAGCACAGCGAACTCGCAAAAGCCATTCGAAATGCACCTGTATACAATGCCCATTATACAAAATACAGGTT TGAAGGAAACAATGTGAATCATTACCTCAACGTCATATTGATTCAACCTGATACGGCCAGACAACCGATCAACTGA
Upstream 100 bases:
>100_bases TATATTCAACAAGCAAAGCATCATTGCCGGCAATCATGCGACGCATCCGCTTCTTCTTGAAAAAGCACTGAAACATTTCA AGCCATAGACCATATCAACC
Downstream 100 bases:
>100_bases CAAGCAACAACCATGACTTGAAAGCAAAGCCATTCTTTATTATCTTTAAAGTCTATAATTTTCTGCTCTTGCAGTTTGCT TTCATTTCCTGTCTAACATT
Product: ABC-type branched-chain amino acid transport systems periplasmic component-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 611; Mature: 611
Protein sequence:
>611_residues MQAKFLTLCCILLFSICPADGEAASPIKAVTAPPPAPVHAQKPEETLRSGKNLFRIKEYSKAQTIFETLLKENGNPQSKI RHSTLLWLSKSLFMQKQPEKAAQLLEELLKNPSINGIDPATIVEAHYDLAACRYKLGTPLSAALDFLNVALSATPAGMQA MQEQALINTKLIACTSLDGNAIASLERIARTPDLQTFLLNARMQNYLQKNNTNTFLSTIPLVDQLLRSPSISRDSQQLME SLKKQAAQLSLATFKERKIGILLPVEIPVYRAAERSSASNQMFKGIHQRLLRYQMERPDILISYSVAKPSEGAENDLFGS TKQLLETSSPLVLIGPMFSNDAIEAARAAKNSKVPLITPTATDNLVTDNNPWAFQLNPTHEERGRIAARELLKTGKPQRA AAIAEKTDNLEEMAKGFLDELKQAGSKSVIYASFSGKPEDQNNLAESLGTPPGTLLDALYLPMDSPETIETTLLFLEKNR IGYKRLLGSGVWSDRKVVERFRKKISKGITFFNDYSFSGSAIETVETAKSHQKLWNTALSSNFWYGYDTMDFLLHTIDKS PDLKHSELAKAIRNAPVYNAHYTKYRFEGNNVNHYLNVILIQPDTARQPIN
Sequences:
>Translated_611_residues MQAKFLTLCCILLFSICPADGEAASPIKAVTAPPPAPVHAQKPEETLRSGKNLFRIKEYSKAQTIFETLLKENGNPQSKI RHSTLLWLSKSLFMQKQPEKAAQLLEELLKNPSINGIDPATIVEAHYDLAACRYKLGTPLSAALDFLNVALSATPAGMQA MQEQALINTKLIACTSLDGNAIASLERIARTPDLQTFLLNARMQNYLQKNNTNTFLSTIPLVDQLLRSPSISRDSQQLME SLKKQAAQLSLATFKERKIGILLPVEIPVYRAAERSSASNQMFKGIHQRLLRYQMERPDILISYSVAKPSEGAENDLFGS TKQLLETSSPLVLIGPMFSNDAIEAARAAKNSKVPLITPTATDNLVTDNNPWAFQLNPTHEERGRIAARELLKTGKPQRA AAIAEKTDNLEEMAKGFLDELKQAGSKSVIYASFSGKPEDQNNLAESLGTPPGTLLDALYLPMDSPETIETTLLFLEKNR IGYKRLLGSGVWSDRKVVERFRKKISKGITFFNDYSFSGSAIETVETAKSHQKLWNTALSSNFWYGYDTMDFLLHTIDKS PDLKHSELAKAIRNAPVYNAHYTKYRFEGNNVNHYLNVILIQPDTARQPIN >Mature_611_residues MQAKFLTLCCILLFSICPADGEAASPIKAVTAPPPAPVHAQKPEETLRSGKNLFRIKEYSKAQTIFETLLKENGNPQSKI RHSTLLWLSKSLFMQKQPEKAAQLLEELLKNPSINGIDPATIVEAHYDLAACRYKLGTPLSAALDFLNVALSATPAGMQA MQEQALINTKLIACTSLDGNAIASLERIARTPDLQTFLLNARMQNYLQKNNTNTFLSTIPLVDQLLRSPSISRDSQQLME SLKKQAAQLSLATFKERKIGILLPVEIPVYRAAERSSASNQMFKGIHQRLLRYQMERPDILISYSVAKPSEGAENDLFGS TKQLLETSSPLVLIGPMFSNDAIEAARAAKNSKVPLITPTATDNLVTDNNPWAFQLNPTHEERGRIAARELLKTGKPQRA AAIAEKTDNLEEMAKGFLDELKQAGSKSVIYASFSGKPEDQNNLAESLGTPPGTLLDALYLPMDSPETIETTLLFLEKNR IGYKRLLGSGVWSDRKVVERFRKKISKGITFFNDYSFSGSAIETVETAKSHQKLWNTALSSNFWYGYDTMDFLLHTIDKS PDLKHSELAKAIRNAPVYNAHYTKYRFEGNNVNHYLNVILIQPDTARQPIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67944; Mature: 67944
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAKFLTLCCILLFSICPADGEAASPIKAVTAPPPAPVHAQKPEETLRSGKNLFRIKEYS CCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCEEEHHHHH KAQTIFETLLKENGNPQSKIRHSTLLWLSKSLFMQKQPEKAAQLLEELLKNPSINGIDPA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHH TIVEAHYDLAACRYKLGTPLSAALDFLNVALSATPAGMQAMQEQALINTKLIACTSLDGN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCH AIASLERIARTPDLQTFLLNARMQNYLQKNNTNTFLSTIPLVDQLLRSPSISRDSQQLME HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH SLKKQAAQLSLATFKERKIGILLPVEIPVYRAAERSSASNQMFKGIHQRLLRYQMERPDI HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCE LISYSVAKPSEGAENDLFGSTKQLLETSSPLVLIGPMFSNDAIEAARAAKNSKVPLITPT EEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEECCC ATDNLVTDNNPWAFQLNPTHEERGRIAARELLKTGKPQRAAAIAEKTDNLEEMAKGFLDE CCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH LKQAGSKSVIYASFSGKPEDQNNLAESLGTPPGTLLDALYLPMDSPETIETTLLFLEKNR HHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHEEEEEECCC IGYKRLLGSGVWSDRKVVERFRKKISKGITFFNDYSFSGSAIETVETAKSHQKLWNTALS CHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH SNFWYGYDTMDFLLHTIDKSPDLKHSELAKAIRNAPVYNAHYTKYRFEGNNVNHYLNVIL CCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEE IQPDTARQPIN ECCCCCCCCCC >Mature Secondary Structure MQAKFLTLCCILLFSICPADGEAASPIKAVTAPPPAPVHAQKPEETLRSGKNLFRIKEYS CCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCEEEHHHHH KAQTIFETLLKENGNPQSKIRHSTLLWLSKSLFMQKQPEKAAQLLEELLKNPSINGIDPA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHH TIVEAHYDLAACRYKLGTPLSAALDFLNVALSATPAGMQAMQEQALINTKLIACTSLDGN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCH AIASLERIARTPDLQTFLLNARMQNYLQKNNTNTFLSTIPLVDQLLRSPSISRDSQQLME HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH SLKKQAAQLSLATFKERKIGILLPVEIPVYRAAERSSASNQMFKGIHQRLLRYQMERPDI HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCE LISYSVAKPSEGAENDLFGSTKQLLETSSPLVLIGPMFSNDAIEAARAAKNSKVPLITPT EEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEECCC ATDNLVTDNNPWAFQLNPTHEERGRIAARELLKTGKPQRAAAIAEKTDNLEEMAKGFLDE CCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH LKQAGSKSVIYASFSGKPEDQNNLAESLGTPPGTLLDALYLPMDSPETIETTLLFLEKNR HHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHEEEEEECCC IGYKRLLGSGVWSDRKVVERFRKKISKGITFFNDYSFSGSAIETVETAKSHQKLWNTALS CHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH SNFWYGYDTMDFLLHTIDKSPDLKHSELAKAIRNAPVYNAHYTKYRFEGNNVNHYLNVIL CCCEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEE IQPDTARQPIN ECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA