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The map label for this gene is nusB

Identifier: 119356339

GI number: 119356339

Start: 550738

End: 551235

Strand: Reverse

Name: nusB

Synonym: Cpha266_0502

Alternate gene names: 119356339

Gene position: 551235-550738 (Counterclockwise)

Preceding gene: 119356340

Following gene: 119356338

Centisome position: 17.59

GC content: 44.18

Gene sequence:

>498_bases
ATGAAGACCTACAGAAGACAGATAAGAGAAAAAATATTGCAGGCGCTCTATACACTCGAACTCAGGGATACCGATATTGA
ATCCGCTGCAAACTGGCTGCTCACCAAAGAAATTCAGGAAGATCCAAACGCCATGAAGTTCTTTAACCTGCTCCTTAAAA
ACATCAAGGAACACCGAGAAGAGATTGACCAGTATATTGCCCGGCACACCTTTAACTGGGACATGAGCCGAATAGCCATC
ATCGATAAAAACATCCTGCGCATGGCTCTTGCCGAACTCCTTTACTGCGAGGACATTCCGCCCAAGGTCTCCATAAACGA
AGCCATTGAAATTGCAAAAAAATTCAGCAGTACCGACAAAAGCAGCAAATTCGTCAATGGCATTCTCGATGCGATTTTCA
ACGAACTGAAAGCCGAAGGAAAAATACACAAGAACGGAAGGGGTCTTATCGACCATTCGGCCATCAAACTGCAGAAAGAA
TCTGAAACTCCTGAATAG

Upstream 100 bases:

>100_bases
CTGCAAAAACACTCTCCCGATGTGCTGTTTGAAAACCTCGCGGAAACAGCGCTTGTGATCGAAAAAATTTTCAACAACTA
ACATAACCCATTGCTCTTTT

Downstream 100 bases:

>100_bases
CCATGCAACGCTCACCGAAGGAAAAAATAACCTTCATAAAAAAAGCTCTCGGCTCAGTTTATCCTGAACCGAAAAGCGAG
CTGCAGTACGCCTCAGCCTT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAMKFFNLLLKNIKEHREEIDQYIARHTFNWDMSRIAI
IDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSSTDKSSKFVNGILDAIFNELKAEGKIHKNGRGLIDHSAIKLQKE
SETPE

Sequences:

>Translated_165_residues
MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAMKFFNLLLKNIKEHREEIDQYIARHTFNWDMSRIAI
IDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSSTDKSSKFVNGILDAIFNELKAEGKIHKNGRGLIDHSAIKLQKE
SETPE
>Mature_165_residues
MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAMKFFNLLLKNIKEHREEIDQYIARHTFNWDMSRIAI
IDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSSTDKSSKFVNGILDAIFNELKAEGKIHKNGRGLIDHSAIKLQKE
SETPE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=121, Percent_Identity=35.5371900826446, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CHLPD (A1BDT2)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_910983.1
- ProteinModelPortal:   A1BDT2
- SMR:   A1BDT2
- STRING:   A1BDT2
- GeneID:   4569272
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0502
- NMPDR:   fig|290317.7.peg.522
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   MKTYRRQ
- ProtClustDB:   CLSK637901
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 19232; Mature: 19232

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAMKFFNLLLKNIKEHRE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EIDQYIARHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSSTDK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCH
SSKFVNGILDAIFNELKAEGKIHKNGRGLIDHSAIKLQKESETPE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCC
>Mature Secondary Structure
MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAMKFFNLLLKNIKEHRE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EIDQYIARHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSSTDK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCH
SSKFVNGILDAIFNELKAEGKIHKNGRGLIDHSAIKLQKESETPE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA