| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is surA [H]
Identifier: 119356179
GI number: 119356179
Start: 370590
End: 372692
Strand: Direct
Name: surA [H]
Synonym: Cpha266_0340
Alternate gene names: 119356179
Gene position: 370590-372692 (Clockwise)
Preceding gene: 119356178
Following gene: 119356186
Centisome position: 11.83
GC content: 46.74
Gene sequence:
>2103_bases ATGGCTGTAATGACCAGCTTAAGGGATAAGACTCATATCATTCTTTATGCGCTTCTGGCTGCGTTTCTTGCCTTGATCGT TTTTGAATGGGGAATGAATTTCTCGGGGTTTTCAGGCAAGAAACGAGACATTGCCGGCAAGGTCAATGGAAAGGATATTT CCGCTGCCCAGTATGAAGAGGTGTATAATGAGATATCCGGTAACTTTCGAAGAACCAACCCCGGTGCCGAAATAACGCCG GTAACCGAACTGGAGTTTCGTCAGCAGGCATGGAATATTGTGGTAGACCAGACGCTGCTTGAAGAGCAGTTTGCAAAATT CGGCATTACCGTTCAGGATCAGGAGGTTGTCGAATCGCTTGACAGTCCTGAACCACCGATGATCATTCGGCAGAATTTTT CCGATTCGACAGGTTCTATTGACAGAAAAAAGCTTGATGTCGCCCGTCGTGATCCTAAAAACAAGGATTTGTGGTTGCAG CTTGAGAAAATGGTTCAGCGGGAACTTAAGGTAAACAAGCTGATTCGTGCACTCCAGCCAATGGTTCGTGTTACCGGTAG AGAGCTTGATGATATTGTCCGCAGAAATTTTGGCAGATTTTCGGCATCGTTTGTGCCTGTTCCCTTGAGCTTTGCCGGTA CTGACACCAGCTTTCCCGTGAAAGAGGATGAGATACAGAAGTATTACAACGAACATAAGGAGCTCTTGAAACAGCTTCCG TCACGATCGGCAGATTATGTGTTTTTTCCTCTTACGCCATCGTCAAAAGACAGTAGCTCTGTTCGCAGCGAGCTTGAATC GCTTCGCTCCGAGTTTTCAGCAGCGGTCAATGATACCGATTATGTAAAGGTTCAGAGTGATCGACCAAATGGCGTTAACG TCTTGTACAACAGGGCAAACTTTTCTCTGCCTGCTGGTTCGATTGTTTTCAGTCCCGCCAATCTTAAAGCCGGCGCCATT GTTGGGCCTGTGGCCGACAGAGGTGAGTATCGGTTACTGAAAATAAAAGAGGTGAGAACTGCACAGCCAATTGCCAGGGC TTCTCATATTCTGCTTCGTTTTAATCCGGGCAACAAGGAGGAAGTGGAGAAAGTTCGTGAGAGGATGGTCATGATATTTA AAAATCTTCAGGCAGGAGTTCCTTTTGAGACGCTTGCCGGAAAATATTCCGAAGATCCCGGCAGCGCTGTGCAGGGCGGC GATCTTGGATGGTTTACAAGGGAGAGCATGCTGCCTGAATTTTCAGCGGCGGTTTTCAGCGGTACCCCTGGCGCTGTTGT TAAACCGGTACAGACCAAATTCGGGTTGCATATCATCAAGGTTACCGGGTTTGATCAGACTGCCGTTATAGCCTCGGAAA TTGTCCGAACCATTCGCCCTTCAACTGAAACCGTTGACAGCGCGCGAAGGCTTGCTATGGCTTTCCAGATGCAGGCAAAG GATAAGGGACTTGAAAAAAGCGCTTCAACCGAAAAGCTCGTGGTTGGTAAAACAGGCGATTTCGGGAAGCATACGCTTAT TGCCGACATCGGCTTCAGCGATAAGATCACAGCCTTTGCTTTTAACGGAAAAGAGGGAGCGCTGTCAGATGTTATAGAAA CCGAAAAAGGTTTTTATGTCATGAAACTTACAGGAGTAAACGATACCGGTTATCGTCGGCTTGATGCTGATTTGAAAAAA AGGATTACGGCTGAACTTGTCCGTCTGAAAAAAGAACCGGTTCTTGAGAAAAAACTTTCATTGAATGCAAAACAGAGTGG AGCTACGCTGGATAAGATCGCGGCAGCCTATCCCGGAACTGTTGTCGTTACGGCAGACGATATTCGGTGGGTTGACGGGT TTATCCCCGGTTACGGATTTGATCAGCCTCTTGTTGAAGCGATGTCTGCAATGACAGAAGGCAAGCTTTCCGGTCCGGTG AAAACCAATGACGGTTATGCAATCGTTCTTTTATCGAAAAAGAATATGCCGGCAGAACGCGATGTTGAGGCAGCAAAAAC CGCTTTTACTCCAAAAATTATTCAGGATAAGCTGAATCGGCTGTTTACGGAATATTTTGCTACGATCAAGAAAAATGCTG TTATAGAGGATCTTCGCCCCTGA
Upstream 100 bases:
>100_bases GTTTCGAAAAGGAAGTATTCAGTGATTTTGCTTTCGTGCCGCTGATAGGCAGGGAAGGGTGGGGTTGATTTTTTTAAACA TCTTAATGAAGGGATGATTT
Downstream 100 bases:
>100_bases ATGATTTCTCTTGAGGGCTTCCCGATAATTTCTTCATAACGGGAAGCTCTCAATACCCTCGCACGCAAGGCGCATGGCAA CCGGGCAGCACAAGGTTTCG
Product: PpiC-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase surA; PPIase surA; Rotamase surA [H]
Number of amino acids: Translated: 700; Mature: 699
Protein sequence:
>700_residues MAVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITP VTELEFRQQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQ LEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLP SRSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAI VGPVADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFETLAGKYSEDPGSAVQGG DLGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAK DKGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKK RITAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPV KTNDGYAIVLLSKKNMPAERDVEAAKTAFTPKIIQDKLNRLFTEYFATIKKNAVIEDLRP
Sequences:
>Translated_700_residues MAVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITP VTELEFRQQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQ LEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLP SRSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAI VGPVADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFETLAGKYSEDPGSAVQGG DLGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAK DKGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKK RITAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPV KTNDGYAIVLLSKKNMPAERDVEAAKTAFTPKIIQDKLNRLFTEYFATIKKNAVIEDLRP >Mature_699_residues AVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITPV TELEFRQQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQL EKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLPS RSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAIV GPVADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFETLAGKYSEDPGSAVQGGD LGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAKD KGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKKR ITAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPVK TNDGYAIVLLSKKNMPAERDVEAAKTAFTPKIIQDKLNRLFTEYFATIKKNAVIEDLRP
Specific function: Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasm. Note=Is capable of associating with the outer membrane (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PpiC domains [H]
Homologues:
Organism=Escherichia coli, GI1786238, Length=208, Percent_Identity=30.2884615384615, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023034 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 77703; Mature: 77572
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDIAGKVNGKDISAAQYEE CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH VYNEISGNFRRTNPGAEITPVTELEFRQQAWNIVVDQTLLEEQFAKFGITVQDQEVVESL HHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC DSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQLEKMVQRELKVNKLIRALQP CCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLP HHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC SRSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRAN CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCC FSLPAGSIVFSPANLKAGAIVGPVADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKE CCCCCCCEEECCCCCCCCEEECCCCCCCCEEEEEEEHHHHHCHHHHCCEEEEEECCCCHH EVEKVRERMVMIFKNLQAGVPFETLAGKYSEDPGSAVQGGDLGWFTRESMLPEFSAAVFS HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHC GTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAK CCCCCEECCHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DKGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYV HCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCEEE MKLTGVNDTGYRRLDADLKKRITAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGT EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHCCCCE VVVTADDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAER EEEEECCCEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCC DVEAAKTAFTPKIIQDKLNRLFTEYFATIKKNAVIEDLRP CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC >Mature Secondary Structure AVMTSLRDKTHIILYALLAAFLALIVFEWGMNFSGFSGKKRDIAGKVNGKDISAAQYEE CCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH VYNEISGNFRRTNPGAEITPVTELEFRQQAWNIVVDQTLLEEQFAKFGITVQDQEVVESL HHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC DSPEPPMIIRQNFSDSTGSIDRKKLDVARRDPKNKDLWLQLEKMVQRELKVNKLIRALQP CCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVRVTGRELDDIVRRNFGRFSASFVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLP HHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC SRSADYVFFPLTPSSKDSSSVRSELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRAN CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCC FSLPAGSIVFSPANLKAGAIVGPVADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKE CCCCCCCEEECCCCCCCCEEECCCCCCCCEEEEEEEHHHHHCHHHHCCEEEEEECCCCHH EVEKVRERMVMIFKNLQAGVPFETLAGKYSEDPGSAVQGGDLGWFTRESMLPEFSAAVFS HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHC GTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAK CCCCCEECCHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DKGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYV HCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCEEE MKLTGVNDTGYRRLDADLKKRITAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGT EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHCCCCE VVVTADDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAER EEEEECCCEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCC DVEAAKTAFTPKIIQDKLNRLFTEYFATIKKNAVIEDLRP CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA