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The map label for this gene is vapB [H]

Identifier: 119355942

GI number: 119355942

Start: 107084

End: 107362

Strand: Reverse

Name: vapB [H]

Synonym: Cpha266_0092

Alternate gene names: 119355942

Gene position: 107362-107084 (Counterclockwise)

Preceding gene: 119355943

Following gene: 119355941

Centisome position: 3.43

GC content: 48.75

Gene sequence:

>279_bases
ATGTATCGGGGTGATCCGAACGACAAAGAAAGAATTTCAATACCAATGGAAACTGCTAAAATTTTTCAATCGGGAAGAAG
CCAGGCCGTCAGACTTCCGAAGGAATTCCGGTTCCAGGGGAAAGAGGTGCTGATCAGCCATTTTGCCGATGGGGTATTGC
TTCTGCCAATCGATAAATCATGGGCAACGCTGGAAGCAGCGCTTGAGGAATTCGAGCCGGAATTCAAACTGGAACGGGAG
CAGCCCGAAGCTGAAAAAAGGGAAGCGATTGCATCGTGA

Upstream 100 bases:

>100_bases
TAAAAAAGGGGAAAAAGCCGACCTCTCACAGGCGCACTGAGACAGATTTTCTTTTGCATATATCGCCAACGATACCTATC
TTTGGTATATATCAATCCGA

Downstream 100 bases:

>100_bases
GATATCTGCTCGATACCAATATCTGCATCTATATCATCAACTCCCGACCCGCAGATGTACTGAAACGTTTCCGTCAGGAA
CAAATCGGCACTATCGGAAT

Product: virulence associated protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVLISHFADGVLLLPIDKSWATLEAALEEFEPEFKLERE
QPEAEKREAIAS

Sequences:

>Translated_92_residues
MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVLISHFADGVLLLPIDKSWATLEAALEEFEPEFKLERE
QPEAEKREAIAS
>Mature_92_residues
MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVLISHFADGVLLLPIDKSWATLEAALEEFEPEFKLERE
QPEAEKREAIAS

Specific function: Unknown

COG id: COG4456

COG function: function code S; Virulence-associated protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10592; Mature: 10592

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVLISHFADGVLLLPIDKS
CCCCCCCCCCEEECCHHHHHHHHCCCHHEECCCHHHHHCCHHHHHHHHCCCEEEEECCCC
WATLEAALEEFEPEFKLEREQPEAEKREAIAS
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MYRGDPNDKERISIPMETAKIFQSGRSQAVRLPKEFRFQGKEVLISHFADGVLLLPIDKS
CCCCCCCCCCEEECCHHHHHHHHCCCHHEECCCHHHHHCCHHHHHHHHCCCEEEEECCCC
WATLEAALEEFEPEFKLEREQPEAEKREAIAS
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1748867; 1398971; 8169216; 8914257 [H]