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The map label for this gene is dapD [H]

Identifier: 119355891

GI number: 119355891

Start: 42441

End: 43304

Strand: Direct

Name: dapD [H]

Synonym: Cpha266_0041

Alternate gene names: 119355891

Gene position: 42441-43304 (Clockwise)

Preceding gene: 119355890

Following gene: 119355892

Centisome position: 1.35

GC content: 52.55

Gene sequence:

>864_bases
ATGACAAGCTATGCTTCATTGAAAGAGGAAATATCGGGTCTGGCTCCCCTCAGTGCCGTTCAGCTTGCTGACTATCCCGA
TGCCCGCAGGGTATTCGATGATTTCAAAAAGCTGCTTAATGCCGGAACAGTACGGGCAGCAGAAAAAAAAGAGGGAGAGT
GGCAGGTCAATTTGTGGGTCAAGGAGGGTATTCTGCTTGGCATGCGTCTTGGCAGACTTGTCGAAAGCCATCTTGTTTTT
CCTGAAACCGGAGGCGGCTTTGATTTTTTTGATAAGGATACCTATCCGCTCAGGCGGATGACGCTTGAAGATCGGGTGCG
TATCGTTCCTGGCGGATCTGCTGTCAGGGATGGTTCTTATCTGGCTCCTTCCGTGGTTATGATGCCGCCGGCCTATGTCA
ATGTCGGCGCGTATGTTGACGAGGGTACGATGATCGATTCCCACGCTCTTGTCGGGAGCTGCGCTCAGGTAGGCAAAAAT
GTCCATCTGTCCGCCGGGGTTCAGGTGGGAGGCGTGCTCGAGCCGGTGGGCGCCGTTCCGGTTATTATCGAAGACGACGT
TATGGTCGGCGGTAATTGCGGGATTTATGAGGGCACCATTGTCAAAGAACGTGCCGTTATCGGTACCGGCGTTATCCTGA
ACGGATCTACGCCCGTGTATGATCTTGCTTTGGAAACCGTCTATCGAAAAACTTCCGGGCATCCGCTTGTTATTCCTGCC
GGCGCTGTTGTCGTTGCGGGTTCCCGTCGGATGAAAGGCGACTTTGCTCTTGAGCACGGGCTGTCGCTCTATACTCCGGT
TATTATCAAGTATCGTGATGAAAAAACCGACAGCGCTACTGCCCTTGAACAAGCTCTGAGATAA

Upstream 100 bases:

>100_bases
GATGAAAGTCTCCGAAGCGATGATTTCAGATTCTACAGTAGAAAAAACAATAAGGAGATCACCGCAGAATACGGTGATCT
CTAAACAGAAACATGCAGTT

Downstream 100 bases:

>100_bases
ACAATGGTCTATGGATTCAGTCGTAGCAGCCGGAGTGTCAGCGTATGACATGCGGCAAACACATGCGTCAGTGCTTATGC
CGGGCGCTGATCTCGGCAGG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTVRAAEKKEGEWQVNLWVKEGILLGMRLGRLVESHLVF
PETGGGFDFFDKDTYPLRRMTLEDRVRIVPGGSAVRDGSYLAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKN
VHLSAGVQVGGVLEPVGAVPVIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTPVYDLALETVYRKTSGHPLVIPA
GAVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKTDSATALEQALR

Sequences:

>Translated_287_residues
MTSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTVRAAEKKEGEWQVNLWVKEGILLGMRLGRLVESHLVF
PETGGGFDFFDKDTYPLRRMTLEDRVRIVPGGSAVRDGSYLAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKN
VHLSAGVQVGGVLEPVGAVPVIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTPVYDLALETVYRKTSGHPLVIPA
GAVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKTDSATALEQALR
>Mature_286_residues
TSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTVRAAEKKEGEWQVNLWVKEGILLGMRLGRLVESHLVFP
ETGGGFDFFDKDTYPLRRMTLEDRVRIVPGGSAVRDGSYLAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKNV
HLSAGVQVGGVLEPVGAVPVIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTPVYDLALETVYRKTSGHPLVIPAG
AVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKTDSATALEQALR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=265, Percent_Identity=41.5094339622642, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30795; Mature: 30664

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTVRAAEKKEGEWQVNLWV
CCCHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEE
KEGILLGMRLGRLVESHLVFPETGGGFDFFDKDTYPLRRMTLEDRVRIVPGGSAVRDGSY
ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEHHHCEEEEECCCCCCCCCC
LAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKNVHLSAGVQVGGVLEPVGAVP
CCCEEEECCCCEEEECEEECCCCEEECHHHHHHHHHHCCCEEEECCCEECCEECCCCCEE
VIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTPVYDLALETVYRKTSGHPLVIPA
EEEECCEEECCCCCEECCEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
GAVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKTDSATALEQALR
CEEEEECCCCCCCCHHHHCCCCEECEEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure 
TSYASLKEEISGLAPLSAVQLADYPDARRVFDDFKKLLNAGTVRAAEKKEGEWQVNLWV
CCHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEE
KEGILLGMRLGRLVESHLVFPETGGGFDFFDKDTYPLRRMTLEDRVRIVPGGSAVRDGSY
ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEHHHCEEEEECCCCCCCCCC
LAPSVVMMPPAYVNVGAYVDEGTMIDSHALVGSCAQVGKNVHLSAGVQVGGVLEPVGAVP
CCCEEEECCCCEEEECEEECCCCEEECHHHHHHHHHHCCCEEEECCCEECCEECCCCCEE
VIIEDDVMVGGNCGIYEGTIVKERAVIGTGVILNGSTPVYDLALETVYRKTSGHPLVIPA
EEEECCEEECCCCCEECCEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
GAVVVAGSRRMKGDFALEHGLSLYTPVIIKYRDEKTDSATALEQALR
CEEEEECCCCCCCCHHHHCCCCEECEEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA