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The map label for this gene is ycjD [C]

Identifier: 118582008

GI number: 118582008

Start: 3991083

End: 3991688

Strand: Reverse

Name: ycjD [C]

Synonym: Ppro_3609

Alternate gene names: 118582008

Gene position: 3991688-3991083 (Counterclockwise)

Preceding gene: 118582009

Following gene: 118582007

Centisome position: 99.59

GC content: 54.79

Gene sequence:

>606_bases
ATGCCGATGAGTAAACCCCTCTCCCGCCTCCCTAAACCCTCCCGATCTCCCCGCAGCTGGGGAGGAGAAGCGAGGGAGGA
GACCAAATCAACCCCCCCTAGCCCCCCCTTATCAGGGGGGGAACATGAAAGCTCCCTCCCTGACAAGGTAGGGCGTGGGG
TGGGTTTGTCTCCCTCCCCTGACAAGGGGAGGGCCGGGGAGGGGTTAGACACCGCCTTTCTCCCTTACAACAAAAATCTC
ACCACCCTTGCCCGCGAGAACCGCAAAAACCCGACTCCAGCTGAAAGCAAAATCTGGAATGAGGTCCTCCGGTTACGGCA
GTTTGCCGATTACAAGTTTCTTCGCCAGAAGCCTCTTGGAAGTTATATCGTCGATTTCTACTGTTCCGAGCTGCGCCTGG
TTATTGAAATCGATGGTGACAGCCATGCTGATACCATTGAATACGATGGGGAGCGGACGAAGTTTTTGCAGTCACTTGGG
GTATCTGTCGTCAGGTATACCAATGCCGATGTCATGCGGAACATCCAGGGTGTGCATGAAGATCTGTGCGAGAGAATCGA
AAAACCACCCTCCCTTGTCAGAGGGGAAGAAAAGCTCCCTCTCTGA

Upstream 100 bases:

>100_bases
CAGCTTAAGGATGAATAATGCCCAAACGGAAACTGGCTCCCGCCGAGAAGGCGCGAAAGAGGGCGAGTGCATTACGCGGG
CCTGAACTGCGAGGATGAGG

Downstream 100 bases:

>100_bases
TAAGGGAGGGCGGGGGGAGGGTTGGTTCACGGAGGCTATTCATGAGTGACATCAACCCCGAACAGGCCGTGCCTCGCTTC
CACTGAGGGGAATCTGCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MPMSKPLSRLPKPSRSPRSWGGEAREETKSTPPSPPLSGGEHESSLPDKVGRGVGLSPSPDKGRAGEGLDTAFLPYNKNL
TTLARENRKNPTPAESKIWNEVLRLRQFADYKFLRQKPLGSYIVDFYCSELRLVIEIDGDSHADTIEYDGERTKFLQSLG
VSVVRYTNADVMRNIQGVHEDLCERIEKPPSLVRGEEKLPL

Sequences:

>Translated_201_residues
MPMSKPLSRLPKPSRSPRSWGGEAREETKSTPPSPPLSGGEHESSLPDKVGRGVGLSPSPDKGRAGEGLDTAFLPYNKNL
TTLARENRKNPTPAESKIWNEVLRLRQFADYKFLRQKPLGSYIVDFYCSELRLVIEIDGDSHADTIEYDGERTKFLQSLG
VSVVRYTNADVMRNIQGVHEDLCERIEKPPSLVRGEEKLPL
>Mature_200_residues
PMSKPLSRLPKPSRSPRSWGGEAREETKSTPPSPPLSGGEHESSLPDKVGRGVGLSPSPDKGRAGEGLDTAFLPYNKNLT
TLARENRKNPTPAESKIWNEVLRLRQFADYKFLRQKPLGSYIVDFYCSELRLVIEIDGDSHADTIEYDGERTKFLQSLGV
SVVRYTNADVMRNIQGVHEDLCERIEKPPSLVRGEEKLPL

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=105, Percent_Identity=41.9047619047619, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 22490; Mature: 22358

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSKPLSRLPKPSRSPRSWGGEAREETKSTPPSPPLSGGEHESSLPDKVGRGVGLSPSP
CCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
DKGRAGEGLDTAFLPYNKNLTTLARENRKNPTPAESKIWNEVLRLRQFADYKFLRQKPLG
CCCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
SYIVDFYCSELRLVIEIDGDSHADTIEYDGERTKFLQSLGVSVVRYTNADVMRNIQGVHE
HHHHHHHHHCEEEEEEECCCCCCCCEEECCHHHHHHHHHCHHHHHHCCHHHHHHHHHHHH
DLCERIEKPPSLVRGEEKLPL
HHHHHHCCCHHHHCCCCCCCC
>Mature Secondary Structure 
PMSKPLSRLPKPSRSPRSWGGEAREETKSTPPSPPLSGGEHESSLPDKVGRGVGLSPSP
CCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
DKGRAGEGLDTAFLPYNKNLTTLARENRKNPTPAESKIWNEVLRLRQFADYKFLRQKPLG
CCCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
SYIVDFYCSELRLVIEIDGDSHADTIEYDGERTKFLQSLGVSVVRYTNADVMRNIQGVHE
HHHHHHHHHCEEEEEEECCCCCCCCEEECCHHHHHHHHHCHHHHHHCCHHHHHHHHHHHH
DLCERIEKPPSLVRGEEKLPL
HHHHHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]