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The map label for this gene is ydcA [H]

Identifier: 118581895

GI number: 118581895

Start: 3861973

End: 3862914

Strand: Direct

Name: ydcA [H]

Synonym: Ppro_3495

Alternate gene names: 118581895

Gene position: 3861973-3862914 (Clockwise)

Preceding gene: 118581894

Following gene: 118581896

Centisome position: 96.36

GC content: 68.9

Gene sequence:

>942_bases
ATGGAGCGTATGGAAGGAGAACGACAAGCGACGGAGCAGGAGCAGTGGCTCCCGCTTCCGGTCGAGACAACAGGGCAACC
GAGCAGGCGGCAGGCGGAAGTCTGGGCGCTGGTGCTGGATTCACGCTCCATACCCTGGCGTCTGGAGCAGACGGGAGCCG
GCCGGCAGTTGCTGGTACAGCGCCGCCACCTGGAGAGCGCCCGGGCGGAACTGCGTCTGTACGAGGAACAGAACCGGAAC
TGGCCTCCGCCGCCACCGGCGATGCGCTCGCTGGTGGGAAACACCCTGGCCACCCTTTCGGTACTGATCCTGCTGGCCAC
CTTCCACAATCTGACCCTGCTGGAGATCTCCCTGCCGGGACAGGGAGTCGTGGACCTGCGCGATCTGGGGGCGCTGCATG
GCGCGGCCGTCCAGGAGGGGCAGTGGTGGCGGCTGGTCACCTCCCTGACCCTGCACGCAGACCTCCCGCACCTGCTGGGA
AACCTGTGCATCGGCGGGGCGATCATCGTCCTGCTCTGCCGTGAGCTGGGGTCGGGGCTGGCCTGGAGCCTGCTCCTTGG
CTCGGGGATGCTGGGCAACCTGATCAACGCCTGGATGCAGGCGCCGGACCATCGTTCCCTGGGGGCATCCACCGCCCTGT
TCGGCGCGGTGGGGATCTTCGCGGCCATGGGCACGGTGCGCTACCGCCACCATCCCCTGCGCCGCTGGCTCGTACCGTTG
GCCGCCGGACTGGCTCTGCTGGCCATGATGGGAAGCGAGGGGGAACGGACCGACCTGGGGGCCCATCTGTTCGGCTTTGG
TGCCGGTCTCGGCCTCGGGCTGATAGCGGAACCGCTCGTGGAGCGCCAGGGCCGACCGGGCCGCCTGGTCAACACCCTGC
TGGCCCTGGCCGCCGCCCTGCTGGTCATACTGGCCTGGTGGGCGGCCCTGACACTCTCCTGA

Upstream 100 bases:

>100_bases
GCCCAAGAAAACTAGGCATAGGCGCCGGGCATTGGGGCTTCCGGTGCCTCGCTACGGGCTGGTTGATTTCCACATCTGGT
CACCGGTTACATGGTACGGA

Downstream 100 bases:

>100_bases
AACCGGCTTGTGCTCCCTCTGTTTTGTGATATTTCCCTACTACCCCGTAACGCTTGGGTTTTCGTACCAAACCCCTTTAA
GCCTCCCCTTGTCAGGGGAG

Product: rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MERMEGERQATEQEQWLPLPVETTGQPSRRQAEVWALVLDSRSIPWRLEQTGAGRQLLVQRRHLESARAELRLYEEQNRN
WPPPPPAMRSLVGNTLATLSVLILLATFHNLTLLEISLPGQGVVDLRDLGALHGAAVQEGQWWRLVTSLTLHADLPHLLG
NLCIGGAIIVLLCRELGSGLAWSLLLGSGMLGNLINAWMQAPDHRSLGASTALFGAVGIFAAMGTVRYRHHPLRRWLVPL
AAGLALLAMMGSEGERTDLGAHLFGFGAGLGLGLIAEPLVERQGRPGRLVNTLLALAAALLVILAWWAALTLS

Sequences:

>Translated_313_residues
MERMEGERQATEQEQWLPLPVETTGQPSRRQAEVWALVLDSRSIPWRLEQTGAGRQLLVQRRHLESARAELRLYEEQNRN
WPPPPPAMRSLVGNTLATLSVLILLATFHNLTLLEISLPGQGVVDLRDLGALHGAAVQEGQWWRLVTSLTLHADLPHLLG
NLCIGGAIIVLLCRELGSGLAWSLLLGSGMLGNLINAWMQAPDHRSLGASTALFGAVGIFAAMGTVRYRHHPLRRWLVPL
AAGLALLAMMGSEGERTDLGAHLFGFGAGLGLGLIAEPLVERQGRPGRLVNTLLALAAALLVILAWWAALTLS
>Mature_313_residues
MERMEGERQATEQEQWLPLPVETTGQPSRRQAEVWALVLDSRSIPWRLEQTGAGRQLLVQRRHLESARAELRLYEEQNRN
WPPPPPAMRSLVGNTLATLSVLILLATFHNLTLLEISLPGQGVVDLRDLGALHGAAVQEGQWWRLVTSLTLHADLPHLLG
NLCIGGAIIVLLCRELGSGLAWSLLLGSGMLGNLINAWMQAPDHRSLGASTALFGAVGIFAAMGTVRYRHHPLRRWLVPL
AAGLALLAMMGSEGERTDLGAHLFGFGAGLGLGLIAEPLVERQGRPGRLVNTLLALAAALLVILAWWAALTLS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 34025; Mature: 34025

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERMEGERQATEQEQWLPLPVETTGQPSRRQAEVWALVLDSRSIPWRLEQTGAGRQLLVQ
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCEEECCCCCCHHHHHH
RRHLESARAELRLYEEQNRNWPPPPPAMRSLVGNTLATLSVLILLATFHNLTLLEISLPG
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
QGVVDLRDLGALHGAAVQEGQWWRLVTSLTLHADLPHLLGNLCIGGAIIVLLCRELGSGL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH
AWSLLLGSGMLGNLINAWMQAPDHRSLGASTALFGAVGIFAAMGTVRYRHHPLRRWLVPL
HHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGLALLAMMGSEGERTDLGAHLFGFGAGLGLGLIAEPLVERQGRPGRLVNTLLALAAAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LVILAWWAALTLS
HHHHHHHHHHHCC
>Mature Secondary Structure
MERMEGERQATEQEQWLPLPVETTGQPSRRQAEVWALVLDSRSIPWRLEQTGAGRQLLVQ
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCEEECCCCCCHHHHHH
RRHLESARAELRLYEEQNRNWPPPPPAMRSLVGNTLATLSVLILLATFHNLTLLEISLPG
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
QGVVDLRDLGALHGAAVQEGQWWRLVTSLTLHADLPHLLGNLCIGGAIIVLLCRELGSGL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH
AWSLLLGSGMLGNLINAWMQAPDHRSLGASTALFGAVGIFAAMGTVRYRHHPLRRWLVPL
HHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGLALLAMMGSEGERTDLGAHLFGFGAGLGLGLIAEPLVERQGRPGRLVNTLLALAAAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LVILAWWAALTLS
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]