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The map label for this gene is yciR [C]

Identifier: 118581892

GI number: 118581892

Start: 3857332

End: 3858756

Strand: Direct

Name: yciR [C]

Synonym: Ppro_3492

Alternate gene names: 118581892

Gene position: 3857332-3858756 (Clockwise)

Preceding gene: 118581886

Following gene: 118581893

Centisome position: 96.24

GC content: 53.89

Gene sequence:

>1425_bases
ATGAAACAGGTTGACCTCGCACTGCAGCGGCTATCCCTCCTCACGGCCTGGAGTATTTCCCTGCTGATCGCCATGGGAGC
GCCAGCGGCATATTATCTGGTGTCGTACCATAACCTGCGGAGTACGCTTGAATTACAGGCATTGCTGGCCATAAAAAGCA
TTGACGCTATCATTGTTGCCAATCCGAAAATGTGGTATTTCGAAGAGGCGCGACTGTCCGAACTGCTTGAGCATCGTGCC
TACGACGCTGTTTTAGAGAGAAAACGTATCCTTGACGCCAGCGGTGCCGTCATCGCCAGCAACAACGTAACCATACCGCC
GCCAGGTGTGTCGTACACTCGTGAGCTTTTCGATGCCGGCACCGCGATTGCCCGCATTGAGGTGTCCCGTTCTCTGCGTC
CGTTGCTGTATATGGCGTTCCTGGTCGCCATCTGTTCAAGTATGTTTGCCGCACTGCTGTTTTTCGTATTCCGCTTGCTG
CCGATCCGAGTCATTCACCGGGCATTTCAGGCGCTGGCACGAAGTGAAAAGAAATACCGTTCACTCTACGAGACCATGAA
AGAGGGGATGGCGCTGCACCGGATGGATTGTGACGACAGGGGCAACCTGCACTCCCTGTCCGTGATCGATGTCAATCCCA
GTTGCGCAGCCATGTTTGACCGTGATCCGGGCAGGATTGTCGGCGGCAACAGCATCACCCTGTTTGGCGATGGATTCAGC
ACGGTGCTCTCGCAACAGCAGCAACTTGAACAGGGAGATTCCATTTCGTTCGAACTGCAGCTGCCCGATACAGACAACCA
TTACATTGTGCGGGCTTTTTCTCCTGACCAGGGGGTGATTGCAACTCTTTTTGAAGATGTTACCGAGCGCAGAAAATCGG
AACAGCAGATTCGACATATGGCGTATTTCGACCCGCTGACAGATCTTCCAAACCGCACGCTTTTCTTTGACCGCCTCAAT
CAGGCCATTGCCGCAGCAAACCGTGAACAGGCCAAGCTTGCAGTACTCTTTCTGGACCTCGATCACTTCAAGAGCATCAA
TGACACCCAGGGGCATGACATCGGAGATCAGGTGTTGATCGAGGTTTCCCGGCGTCTTCACCGACAGATCCGCAGCTGTG
ACACCCTGGCCCGCATGGGAGGAGACGAATTCGTCCTTGTCATCACCGGAATCGGAGAAACGCTGGATGCCAGTTGCGTT
GCCCGGAAACTGATTGACTCGATCCACTCCCCCCTCAGTATCAGGGGCAATGAACTGCACATTTCCATGAGTATGGGGAT
TGCACTCTTTGCGGACAGTGGCGCCGATGCGGAAACACTCATCAAAAACGCCGACCTTGCGATGTATCATGCAAAAAAAT
CGGGCCGGAATACGTACAGATTCTACTCACCGACCATGGGCTCCTCCTCTGCCCATGGAGGCTGA

Upstream 100 bases:

>100_bases
TGGCGCCCACAACGGGAATCCAGAGACAACTGTCTCTACAGCTGCCCACCAGTGCCGAAAAGAGCGGCGCTTTTGCGGCC
AGTGAAGCACCGGCTTACCC

Downstream 100 bases:

>100_bases
CAGGGGCTGAGACGACACCCAGGAGCGCTGAGATCCGTACTGCTCCAGGGCAATCCACTGCAGGTACGCGGGGAGAACGG
AGGTGCTTGAATGATGAAAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKQVDLALQRLSLLTAWSISLLIAMGAPAAYYLVSYHNLRSTLELQALLAIKSIDAIIVANPKMWYFEEARLSELLEHRA
YDAVLERKRILDASGAVIASNNVTIPPPGVSYTRELFDAGTAIARIEVSRSLRPLLYMAFLVAICSSMFAALLFFVFRLL
PIRVIHRAFQALARSEKKYRSLYETMKEGMALHRMDCDDRGNLHSLSVIDVNPSCAAMFDRDPGRIVGGNSITLFGDGFS
TVLSQQQQLEQGDSISFELQLPDTDNHYIVRAFSPDQGVIATLFEDVTERRKSEQQIRHMAYFDPLTDLPNRTLFFDRLN
QAIAAANREQAKLAVLFLDLDHFKSINDTQGHDIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCV
ARKLIDSIHSPLSIRGNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYSPTMGSSSAHGG

Sequences:

>Translated_474_residues
MKQVDLALQRLSLLTAWSISLLIAMGAPAAYYLVSYHNLRSTLELQALLAIKSIDAIIVANPKMWYFEEARLSELLEHRA
YDAVLERKRILDASGAVIASNNVTIPPPGVSYTRELFDAGTAIARIEVSRSLRPLLYMAFLVAICSSMFAALLFFVFRLL
PIRVIHRAFQALARSEKKYRSLYETMKEGMALHRMDCDDRGNLHSLSVIDVNPSCAAMFDRDPGRIVGGNSITLFGDGFS
TVLSQQQQLEQGDSISFELQLPDTDNHYIVRAFSPDQGVIATLFEDVTERRKSEQQIRHMAYFDPLTDLPNRTLFFDRLN
QAIAAANREQAKLAVLFLDLDHFKSINDTQGHDIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCV
ARKLIDSIHSPLSIRGNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYSPTMGSSSAHGG
>Mature_474_residues
MKQVDLALQRLSLLTAWSISLLIAMGAPAAYYLVSYHNLRSTLELQALLAIKSIDAIIVANPKMWYFEEARLSELLEHRA
YDAVLERKRILDASGAVIASNNVTIPPPGVSYTRELFDAGTAIARIEVSRSLRPLLYMAFLVAICSSMFAALLFFVFRLL
PIRVIHRAFQALARSEKKYRSLYETMKEGMALHRMDCDDRGNLHSLSVIDVNPSCAAMFDRDPGRIVGGNSITLFGDGFS
TVLSQQQQLEQGDSISFELQLPDTDNHYIVRAFSPDQGVIATLFEDVTERRKSEQQIRHMAYFDPLTDLPNRTLFFDRLN
QAIAAANREQAKLAVLFLDLDHFKSINDTQGHDIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCV
ARKLIDSIHSPLSIRGNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYSPTMGSSSAHGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=282, Percent_Identity=29.4326241134752, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693134, Length=214, Percent_Identity=34.5794392523364, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788381, Length=209, Percent_Identity=33.4928229665072, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=29.5454545454545, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081977, Length=195, Percent_Identity=32.3076923076923, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081921, Length=180, Percent_Identity=29.4444444444444, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=30.3571428571429, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=32.5301204819277, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081881, Length=235, Percent_Identity=28.936170212766, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=35.4430379746835, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787816, Length=207, Percent_Identity=29.951690821256, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=33.7579617834395, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 52811; Mature: 52811

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVDLALQRLSLLTAWSISLLIAMGAPAAYYLVSYHNLRSTLELQALLAIKSIDAIIVA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
NPKMWYFEEARLSELLEHRAYDAVLERKRILDASGAVIASNNVTIPPPGVSYTRELFDAG
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCHHHHHHHHCC
TAIARIEVSRSLRPLLYMAFLVAICSSMFAALLFFVFRLLPIRVIHRAFQALARSEKKYR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYETMKEGMALHRMDCDDRGNLHSLSVIDVNPSCAAMFDRDPGRIVGGNSITLFGDGFS
HHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCHHEEECCCCCEEECCCEEEEEECCHH
TVLSQQQQLEQGDSISFELQLPDTDNHYIVRAFSPDQGVIATLFEDVTERRKSEQQIRHM
HHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AYFDPLTDLPNRTLFFDRLNQAIAAANREQAKLAVLFLDLDHFKSINDTQGHDIGDQVLI
HHHCCHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHCCCCCCCCCCCHHHHHH
EVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCVARKLIDSIHSPLSIRGNELH
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEE
ISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYSPTMGSSSAHGG
EEEECCEEEEECCCCCHHHHHHCCCCEEEEHHHCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKQVDLALQRLSLLTAWSISLLIAMGAPAAYYLVSYHNLRSTLELQALLAIKSIDAIIVA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
NPKMWYFEEARLSELLEHRAYDAVLERKRILDASGAVIASNNVTIPPPGVSYTRELFDAG
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCHHHHHHHHCC
TAIARIEVSRSLRPLLYMAFLVAICSSMFAALLFFVFRLLPIRVIHRAFQALARSEKKYR
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYETMKEGMALHRMDCDDRGNLHSLSVIDVNPSCAAMFDRDPGRIVGGNSITLFGDGFS
HHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCHHEEECCCCCEEECCCEEEEEECCHH
TVLSQQQQLEQGDSISFELQLPDTDNHYIVRAFSPDQGVIATLFEDVTERRKSEQQIRHM
HHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AYFDPLTDLPNRTLFFDRLNQAIAAANREQAKLAVLFLDLDHFKSINDTQGHDIGDQVLI
HHHCCHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHCCCCCCCCCCCHHHHHH
EVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCVARKLIDSIHSPLSIRGNELH
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEE
ISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRNTYRFYSPTMGSSSAHGG
EEEECCEEEEECCCCCHHHHHHCCCCEEEEHHHCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]