| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is epsC [H]
Identifier: 118581785
GI number: 118581785
Start: 3736415
End: 3738370
Strand: Reverse
Name: epsC [H]
Synonym: Ppro_3385
Alternate gene names: 118581785
Gene position: 3738370-3736415 (Counterclockwise)
Preceding gene: 118581786
Following gene: 118581784
Centisome position: 93.27
GC content: 60.12
Gene sequence:
>1956_bases ATGTACTACCCACGCATGGTCAGGGAAAAACGCTTCTGGCGCATCCTGCTGTTCAAAGTCTGCCTGATCGCCTTTTCGCT GCTGTTGGCCTTTTTGCTGCGCTTCGACTTCTCCATTCCCTCCGCCGACTGGCGGCTTTTTGCGCAACTCCTTGCACCAC TCCTGATGATCAAAATTGCTGTTTTCTGGAAGATGGGGCTCAACCATGGCTGGTGGCGCTATGTTTCCATTGCCGACGTG ATCGAGATCTTCAAGGCCAATGTCTTCGCCTCGGCCCTGTTCGTGCTGTACGTGGCCTTCAGCCGTGGCATGACGGGAAT CCCCCGTTCCGTGCTCCTGCTGGACGGGCTGCTCTGCTTTCTCCTCGGTTGTGGCGTTCGCCTGGTTACCCGTGCCTACC GCGAAAACTACTTCCCCATGCCGACGATGCAGGAGAACAACCTGAAGAGGGTGCTGGTGGTGGGCGCCGGCTCTGCCGGC CAGGCCATCGTGCGGGAGATGCGCCAGAATCCTTCCCTGGCTATTTCGGTTGTCGGTTTCATCGACGACGACCCCGAAAA GCAGGAACAGCACTTCCATGGCGTGCCGGTACTGGGCGGACAGGAAAATCTGGACCCTGTTTGCCGGGAACGTGGCGTTG CCGAAGTCATCATTGCCATACCCTCCGCCACCGGCAAACAGGTGCGGAGTATCGTCGACCGCTGCCGTCAAGCGGGTGTT ACCTTCAAGACGCTGCCGGGCGTGGGCGACCTGATTGGCGGAAACGTGACCGTGCAGCAGATAAAGGATGTGGATCTGGA TGACCTGCTGGGGCGCGAGCCGATAACGCTGGATATCGAGAGGATCAAGAGTTACCTGCAGGGAAAGAGAATCCTGGTTA CCGGTGCGGCCGGCAGCATCGGCAGCGAGATTTGCCGCCAGGTGGCCCGCTTCAACCCGGACAAGCTGATTCTGCTGGAT GTGGCGGAAACGCCGCTCTTCTTTCTGGAGCGGGAGCTGGCCGAGCGTTTTCCCGCCCTGCATCTGGCCACCGTGATCGG CGATATCCGTGCCCGTACCCTGCTTAACGCCACCTTCGACGAGTTTCTGCCGGAAGTGGTCTTCCACGCCGCAGCCTACA AGCATGTGCCCATGATGGAGGCCAATCCCGAGGCCGCGGCCAACAACAACGTGCGCGGCACCAGGGTCGTCGCCGATGCC GCCCACCAGTTCGGCGTCAAACACTTCGTGATGATCTCCACGGACAAGGCGGTAAATCCCACCAATATCATGGGCGCCTC CAAGCGGGCAGCCGAGCTGTACGTGCAGAACCTGGCCAGGAGGAGCACAACTAATTACGTAACCGTCCGTTTCGGCAATG TGCTGGGGAGCAATGGCAGCGTTATCCCCATCTTCCGCCAACAGATCAAGAGGGGCGGGCCGGTGACGGTCACCCATCCC GAGGTCATCCGCTATTTCATGACCATTCCCGAGGCAGCCCAGCTAGTCCTGCAGGCCGGGAGCATGGGCAAGGGGGGAGA GATCTTCCTGCTGGACATGGGGGAGCCGGTCAAGATCCTGACCCTGGCCGAGGAGATGATTCGACTTTCAGGATTCCGCC CCTACGAGGATATCGATATCAGCTTCACCGGCCTGAGGCCCGGGGAAAAGCTGTACGAGGAGCTGCTCCTGGCCGGCGAG GGGATCCGACCCACCTGCCACGCAAAGATCATGGTAGCCCAGGCGACCCTCCGCGAATGGTATACCCTCAACCGCCAGCT TGACGAACTGTACCGTGCCACCCAGCGGGCCGACACGGGCCGGATTGTCAGCCTCATCGAGGAAATCGTTCCCGAGTATT GTTGCCAGCGGAAGCCGGTGGTACTGGCCTCTAAGAAAAATCCGGAGCAGCCTGCCGTATTCCCGACGGCAAAGCCGGAC AGTGCGGCACATCCCGCTTTTATGCTCAACCCATGA
Upstream 100 bases:
>100_bases CACAACAACACCCCGACTTGCATTCCATTATTTCTGGATTATTCTTGCTTAACGTTGTAGGGAGGTCTTGACACTGGTGT CGCGAAAAGGTGAGCACAAC
Downstream 100 bases:
>100_bases GAAACCTCCTATACTCGGGGACGGCTCTGTGGTATCTTCTGCTGCCGCAGGGTTGTCACCTCTTGTGTTCGGAGTGTTTT GATGAACAAACGTCTTTTCC
Product: polysaccharide biosynthesis protein CapD
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 651; Mature: 651
Protein sequence:
>651_residues MYYPRMVREKRFWRILLFKVCLIAFSLLLAFLLRFDFSIPSADWRLFAQLLAPLLMIKIAVFWKMGLNHGWWRYVSIADV IEIFKANVFASALFVLYVAFSRGMTGIPRSVLLLDGLLCFLLGCGVRLVTRAYRENYFPMPTMQENNLKRVLVVGAGSAG QAIVREMRQNPSLAISVVGFIDDDPEKQEQHFHGVPVLGGQENLDPVCRERGVAEVIIAIPSATGKQVRSIVDRCRQAGV TFKTLPGVGDLIGGNVTVQQIKDVDLDDLLGREPITLDIERIKSYLQGKRILVTGAAGSIGSEICRQVARFNPDKLILLD VAETPLFFLERELAERFPALHLATVIGDIRARTLLNATFDEFLPEVVFHAAAYKHVPMMEANPEAAANNNVRGTRVVADA AHQFGVKHFVMISTDKAVNPTNIMGASKRAAELYVQNLARRSTTNYVTVRFGNVLGSNGSVIPIFRQQIKRGGPVTVTHP EVIRYFMTIPEAAQLVLQAGSMGKGGEIFLLDMGEPVKILTLAEEMIRLSGFRPYEDIDISFTGLRPGEKLYEELLLAGE GIRPTCHAKIMVAQATLREWYTLNRQLDELYRATQRADTGRIVSLIEEIVPEYCCQRKPVVLASKKNPEQPAVFPTAKPD SAAHPAFMLNP
Sequences:
>Translated_651_residues MYYPRMVREKRFWRILLFKVCLIAFSLLLAFLLRFDFSIPSADWRLFAQLLAPLLMIKIAVFWKMGLNHGWWRYVSIADV IEIFKANVFASALFVLYVAFSRGMTGIPRSVLLLDGLLCFLLGCGVRLVTRAYRENYFPMPTMQENNLKRVLVVGAGSAG QAIVREMRQNPSLAISVVGFIDDDPEKQEQHFHGVPVLGGQENLDPVCRERGVAEVIIAIPSATGKQVRSIVDRCRQAGV TFKTLPGVGDLIGGNVTVQQIKDVDLDDLLGREPITLDIERIKSYLQGKRILVTGAAGSIGSEICRQVARFNPDKLILLD VAETPLFFLERELAERFPALHLATVIGDIRARTLLNATFDEFLPEVVFHAAAYKHVPMMEANPEAAANNNVRGTRVVADA AHQFGVKHFVMISTDKAVNPTNIMGASKRAAELYVQNLARRSTTNYVTVRFGNVLGSNGSVIPIFRQQIKRGGPVTVTHP EVIRYFMTIPEAAQLVLQAGSMGKGGEIFLLDMGEPVKILTLAEEMIRLSGFRPYEDIDISFTGLRPGEKLYEELLLAGE GIRPTCHAKIMVAQATLREWYTLNRQLDELYRATQRADTGRIVSLIEEIVPEYCCQRKPVVLASKKNPEQPAVFPTAKPD SAAHPAFMLNP >Mature_651_residues MYYPRMVREKRFWRILLFKVCLIAFSLLLAFLLRFDFSIPSADWRLFAQLLAPLLMIKIAVFWKMGLNHGWWRYVSIADV IEIFKANVFASALFVLYVAFSRGMTGIPRSVLLLDGLLCFLLGCGVRLVTRAYRENYFPMPTMQENNLKRVLVVGAGSAG QAIVREMRQNPSLAISVVGFIDDDPEKQEQHFHGVPVLGGQENLDPVCRERGVAEVIIAIPSATGKQVRSIVDRCRQAGV TFKTLPGVGDLIGGNVTVQQIKDVDLDDLLGREPITLDIERIKSYLQGKRILVTGAAGSIGSEICRQVARFNPDKLILLD VAETPLFFLERELAERFPALHLATVIGDIRARTLLNATFDEFLPEVVFHAAAYKHVPMMEANPEAAANNNVRGTRVVADA AHQFGVKHFVMISTDKAVNPTNIMGASKRAAELYVQNLARRSTTNYVTVRFGNVLGSNGSVIPIFRQQIKRGGPVTVTHP EVIRYFMTIPEAAQLVLQAGSMGKGGEIFLLDMGEPVKILTLAEEMIRLSGFRPYEDIDISFTGLRPGEKLYEELLLAGE GIRPTCHAKIMVAQATLREWYTLNRQLDELYRATQRADTGRIVSLIEEIVPEYCCQRKPVVLASKKNPEQPAVFPTAKPD SAAHPAFMLNP
Specific function: Involved in biofilm formation [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
Organism=Homo sapiens, GI7657641, Length=261, Percent_Identity=26.8199233716475, Blast_Score=76, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 72554; Mature: 72554
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYYPRMVREKRFWRILLFKVCLIAFSLLLAFLLRFDFSIPSADWRLFAQLLAPLLMIKIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VFWKMGLNHGWWRYVSIADVIEIFKANVFASALFVLYVAFSRGMTGIPRSVLLLDGLLCF HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LLGCGVRLVTRAYRENYFPMPTMQENNLKRVLVVGAGSAGQAIVREMRQNPSLAISVVGF HHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEE IDDDPEKQEQHFHGVPVLGGQENLDPVCRERGVAEVIIAIPSATGKQVRSIVDRCRQAGV CCCCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC TFKTLPGVGDLIGGNVTVQQIKDVDLDDLLGREPITLDIERIKSYLQGKRILVTGAAGSI EEEECCCCHHHHCCCEEEEHHHCCCHHHHHCCCCCEEEHHHHHHHHCCCEEEEEECCCCH GSEICRQVARFNPDKLILLDVAETPLFFLERELAERFPALHLATVIGDIRARTLLNATFD HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH EFLPEVVFHAAAYKHVPMMEANPEAAANNNVRGTRVVADAAHQFGVKHFVMISTDKAVNP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC TNIMGASKRAAELYVQNLARRSTTNYVTVRFGNVLGSNGSVIPIFRQQIKRGGPVTVTHP HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCCEEHHHHHHHHCCCCEEEECH EVIRYFMTIPEAAQLVLQAGSMGKGGEIFLLDMGEPVKILTLAEEMIRLSGFRPYEDIDI HHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCE SFTGLRPGEKLYEELLLAGEGIRPTCHAKIMVAQATLREWYTLNRQLDELYRATQRADTG EEECCCCHHHHHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RIVSLIEEIVPEYCCQRKPVVLASKKNPEQPAVFPTAKPDSAAHPAFMLNP HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MYYPRMVREKRFWRILLFKVCLIAFSLLLAFLLRFDFSIPSADWRLFAQLLAPLLMIKIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VFWKMGLNHGWWRYVSIADVIEIFKANVFASALFVLYVAFSRGMTGIPRSVLLLDGLLCF HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LLGCGVRLVTRAYRENYFPMPTMQENNLKRVLVVGAGSAGQAIVREMRQNPSLAISVVGF HHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEE IDDDPEKQEQHFHGVPVLGGQENLDPVCRERGVAEVIIAIPSATGKQVRSIVDRCRQAGV CCCCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC TFKTLPGVGDLIGGNVTVQQIKDVDLDDLLGREPITLDIERIKSYLQGKRILVTGAAGSI EEEECCCCHHHHCCCEEEEHHHCCCHHHHHCCCCCEEEHHHHHHHHCCCEEEEEECCCCH GSEICRQVARFNPDKLILLDVAETPLFFLERELAERFPALHLATVIGDIRARTLLNATFD HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH EFLPEVVFHAAAYKHVPMMEANPEAAANNNVRGTRVVADAAHQFGVKHFVMISTDKAVNP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC TNIMGASKRAAELYVQNLARRSTTNYVTVRFGNVLGSNGSVIPIFRQQIKRGGPVTVTHP HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCCEEHHHHHHHHCCCCEEEECH EVIRYFMTIPEAAQLVLQAGSMGKGGEIFLLDMGEPVKILTLAEEMIRLSGFRPYEDIDI HHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCE SFTGLRPGEKLYEELLLAGEGIRPTCHAKIMVAQATLREWYTLNRQLDELYRATQRADTG EEECCCCHHHHHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RIVSLIEEIVPEYCCQRKPVVLASKKNPEQPAVFPTAKPDSAAHPAFMLNP HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]