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The map label for this gene is ycdT [C]

Identifier: 118581769

GI number: 118581769

Start: 3719465

End: 3720844

Strand: Direct

Name: ycdT [C]

Synonym: Ppro_3369

Alternate gene names: 118581769

Gene position: 3719465-3720844 (Clockwise)

Preceding gene: 118581768

Following gene: 118581770

Centisome position: 92.8

GC content: 62.75

Gene sequence:

>1380_bases
ATGGGCACACATGACAAATCGCAGGCCATCAGTTTGAAGCGCCGAATCAACTCCGTGGTCAGCGCCAGGTGGTTCGCAAT
TGCCGGCGCACTCCTGGTCTTCGTGCTTACGGTGTCTCTCGGCGAAGCCGTCCTCCAGGCCCAGCGGCACGAAGCCGATA
ATCAACGACGAATCGAGATGACATCGTACGCGGCCATGCTGCGGGCCCACGTGGAGAGGGAACTCAATTCACTGCTCTAT
CTCAACAGCGGCTTGGGAAGCTATCTCGTCGTGCGCAACAACCGCATCCAGTCAAAGGAAATCGGTGACATGCTCGCCGT
CCTGTACAAGGGGAACCCGCATGTGCGCAACTTCGGCATCGCCGTCGGTTATCGCCTGACCTACGTCTATCCGCTCACCG
GCAACGAGAAGGCCATCGGCATCGATTACCGGAGTCTGCCGGGCCAGTGGCCCGTTATCCAGCGCATCGTCGCCAGCGGC
AAGCCGGCGCTGGCCGGACCGCTCGACCTGGTCCAGGGGGGCAGCGGCCTGATCTACCGTGTACCCCTGTTCCTTGGCGG
AAACTACTGGGGGCTTTTGTCCACGGTGATCGACTCGGATTCGCTGTTCAAGAGCGTGTTCAAGGAGTCAAAAGACGGCC
GCTTCGAGCATGCGCTGCGCGGCAGAGACGGCCTGGGCAGCAAAGGAGACGTCATCCTCGGCAACATCGCCCTGTTCGCC
CGGAGCGATGCCGTGGTTCAGGAAATCGACATCCCCGGCGGCCGCTGGGCGATTGCGGTGGCTCCGCGCTACGACAACTT
CAACCACAACCTGCCGTACCTGGCGAGGATTACCGTCGCCCTTGCCGGCGGCCTGATCGCCTGGATGCTCTACGCCCTGA
TCCGCAGTCGTGCCGAGCTGGCGCGACTGGTGATGTTCGATTCCCTCACCGGCCTGCCCAACCGGCGCCTCCTGACGGAT
CGGGCACGCGTCGCCTTTGCGCGCCAGCATCGCCACCCGGACCAGGCCTGCGCGATTCTGTTCCTGGACATGAATGGTTT
CAAAGACGTCAACGACCGGTATGGCCACAACGCGGGCGATGCCGTACTGCGGGAGGTCGCACGGCGCTGCCGGGCAACCG
TGCGCGCCGAAGATACCGTTGCCCGCTGGGGTGGCGACGAGTTCGTCGTGCTGATGGAAGCGGTTTCCGAGGAAAGGGTG
CAAGCGCTTGTCGCCCGATTGCGCGAAGTCCTCGAGACACAGATCACCCTCGACGGCAAACGCTTCCAGCTTGGCGTATC
GGTCGGGGTTGTGCTTCACCGCGAAGGCGACGCCAGCCTTGAGGAGATCATCGGGATGGCCGATCAACGCATGTATTCCG
ACAAGCTGCAGCGCAGGTAG

Upstream 100 bases:

>100_bases
GGCAGGAGGATCCCGCTGGGCGAAAAGGTCATCTCACCAGCGGCAATGTTCAACTCGAAAGAGCTGGTGACGGTGGAGAA
AGAGTAGAGGGCGGCGCTGG

Downstream 100 bases:

>100_bases
GTCGGCCCATCATCACCCAAGGAGCATACAAGATGAAGTTGTCGTATTTCCCCCTTCTCCTCATGGCTGTTCTCTGCATC
TCTTCGCCTGTATTAGCTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MGTHDKSQAISLKRRINSVVSARWFAIAGALLVFVLTVSLGEAVLQAQRHEADNQRRIEMTSYAAMLRAHVERELNSLLY
LNSGLGSYLVVRNNRIQSKEIGDMLAVLYKGNPHVRNFGIAVGYRLTYVYPLTGNEKAIGIDYRSLPGQWPVIQRIVASG
KPALAGPLDLVQGGSGLIYRVPLFLGGNYWGLLSTVIDSDSLFKSVFKESKDGRFEHALRGRDGLGSKGDVILGNIALFA
RSDAVVQEIDIPGGRWAIAVAPRYDNFNHNLPYLARITVALAGGLIAWMLYALIRSRAELARLVMFDSLTGLPNRRLLTD
RARVAFARQHRHPDQACAILFLDMNGFKDVNDRYGHNAGDAVLREVARRCRATVRAEDTVARWGGDEFVVLMEAVSEERV
QALVARLREVLETQITLDGKRFQLGVSVGVVLHREGDASLEEIIGMADQRMYSDKLQRR

Sequences:

>Translated_459_residues
MGTHDKSQAISLKRRINSVVSARWFAIAGALLVFVLTVSLGEAVLQAQRHEADNQRRIEMTSYAAMLRAHVERELNSLLY
LNSGLGSYLVVRNNRIQSKEIGDMLAVLYKGNPHVRNFGIAVGYRLTYVYPLTGNEKAIGIDYRSLPGQWPVIQRIVASG
KPALAGPLDLVQGGSGLIYRVPLFLGGNYWGLLSTVIDSDSLFKSVFKESKDGRFEHALRGRDGLGSKGDVILGNIALFA
RSDAVVQEIDIPGGRWAIAVAPRYDNFNHNLPYLARITVALAGGLIAWMLYALIRSRAELARLVMFDSLTGLPNRRLLTD
RARVAFARQHRHPDQACAILFLDMNGFKDVNDRYGHNAGDAVLREVARRCRATVRAEDTVARWGGDEFVVLMEAVSEERV
QALVARLREVLETQITLDGKRFQLGVSVGVVLHREGDASLEEIIGMADQRMYSDKLQRR
>Mature_458_residues
GTHDKSQAISLKRRINSVVSARWFAIAGALLVFVLTVSLGEAVLQAQRHEADNQRRIEMTSYAAMLRAHVERELNSLLYL
NSGLGSYLVVRNNRIQSKEIGDMLAVLYKGNPHVRNFGIAVGYRLTYVYPLTGNEKAIGIDYRSLPGQWPVIQRIVASGK
PALAGPLDLVQGGSGLIYRVPLFLGGNYWGLLSTVIDSDSLFKSVFKESKDGRFEHALRGRDGLGSKGDVILGNIALFAR
SDAVVQEIDIPGGRWAIAVAPRYDNFNHNLPYLARITVALAGGLIAWMLYALIRSRAELARLVMFDSLTGLPNRRLLTDR
ARVAFARQHRHPDQACAILFLDMNGFKDVNDRYGHNAGDAVLREVARRCRATVRAEDTVARWGGDEFVVLMEAVSEERVQ
ALVARLREVLETQITLDGKRFQLGVSVGVVLHREGDASLEEIIGMADQRMYSDKLQRR

Specific function: Unknown

COG id: COG3452

COG function: function code T; Predicted periplasmic ligand-binding sensor domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=227, Percent_Identity=28.1938325991189, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=33.7662337662338, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=32.0224719101124, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=33.9506172839506, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=34.5454545454545, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=187, Percent_Identity=28.8770053475936, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=196, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=34.9693251533742, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=154, Percent_Identity=32.4675324675325, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87081974, Length=213, Percent_Identity=25.3521126760563, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=180, Percent_Identity=32.2222222222222, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=28.9617486338798, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788085, Length=192, Percent_Identity=23.9583333333333, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 51010; Mature: 50878

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50839 CHASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTHDKSQAISLKRRINSVVSARWFAIAGALLVFVLTVSLGEAVLQAQRHEADNQRRIEM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
TSYAAMLRAHVERELNSLLYLNSGLGSYLVVRNNRIQSKEIGDMLAVLYKGNPHVRNFGI
HHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECE
AVGYRLTYVYPLTGNEKAIGIDYRSLPGQWPVIQRIVASGKPALAGPLDLVQGGSGLIYR
EEEEEEEEEEEECCCCEEEEEEHHCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE
VPLFLGGNYWGLLSTVIDSDSLFKSVFKESKDGRFEHALRGRDGLGSKGDVILGNIALFA
EEEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEE
RSDAVVQEIDIPGGRWAIAVAPRYDNFNHNLPYLARITVALAGGLIAWMLYALIRSRAEL
CCCHHHEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLVMFDSLTGLPNRRLLTDRARVAFARQHRHPDQACAILFLDMNGFKDVNDRYGHNAGD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCCCHHH
AVLREVARRCRATVRAEDTVARWGGDEFVVLMEAVSEERVQALVARLREVLETQITLDGK
HHHHHHHHHHHHHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
RFQLGVSVGVVLHREGDASLEEIIGMADQRMYSDKLQRR
EEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GTHDKSQAISLKRRINSVVSARWFAIAGALLVFVLTVSLGEAVLQAQRHEADNQRRIEM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHH
TSYAAMLRAHVERELNSLLYLNSGLGSYLVVRNNRIQSKEIGDMLAVLYKGNPHVRNFGI
HHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECE
AVGYRLTYVYPLTGNEKAIGIDYRSLPGQWPVIQRIVASGKPALAGPLDLVQGGSGLIYR
EEEEEEEEEEEECCCCEEEEEEHHCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE
VPLFLGGNYWGLLSTVIDSDSLFKSVFKESKDGRFEHALRGRDGLGSKGDVILGNIALFA
EEEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEE
RSDAVVQEIDIPGGRWAIAVAPRYDNFNHNLPYLARITVALAGGLIAWMLYALIRSRAEL
CCCHHHEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLVMFDSLTGLPNRRLLTDRARVAFARQHRHPDQACAILFLDMNGFKDVNDRYGHNAGD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCCCHHH
AVLREVARRCRATVRAEDTVARWGGDEFVVLMEAVSEERVQALVARLREVLETQITLDGK
HHHHHHHHHHHHHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
RFQLGVSVGVVLHREGDASLEEIIGMADQRMYSDKLQRR
EEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]