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The map label for this gene is pqqE [H]

Identifier: 118581347

GI number: 118581347

Start: 3215152

End: 3216228

Strand: Direct

Name: pqqE [H]

Synonym: Ppro_2942

Alternate gene names: 118581347

Gene position: 3215152-3216228 (Clockwise)

Preceding gene: 118581344

Following gene: 118581348

Centisome position: 80.22

GC content: 61.19

Gene sequence:

>1077_bases
ATGCAAGCTGAATTCACACCCAAATGGATCGCCTGGGAGACCACGCAGAAATGCAACCTTCGCTGCGTGCACTGCCGCTG
CTCGTCGGAGCTGGATTCATCCCAGGGCGACTTCAGCACCCAGGAGGGGAAGACGCTGCTGAGAGAGATCGCCGACTTCT
CCAAGCCGGTCGTGGTCCTCTCCGGTGGCGAGCCGCTCATGCGGCCGGACATTTTCGAACTGGCCCGCTGTGGCACCTCA
CTGGGGCTGCGCATGTGCATGGCAACCAACGGAAGCCTGGTGACGAAAGAGACCTGCCGCGATATGGCCGGAGCAGACAT
CAAAATGGTTTCCCTCTCCCTGGACGGCAGCTCCGCCGCGATACACGACGATTTCCGCCAGTGCCCCGGCGCCTTCGACG
GCGTTGTCCGCGCCGCGGAACTGTTCCGCGCACACGGCCAGAAATTCCTGATCAACTCATCTTTCACCCGGCGCAACCAG
CACGACATCGCCGCCACCTTCAGGCTCGCCAAACAGCTGGGCGCCACGGCCTGGTATATGTTCATGATCGTGCCCACCGG
CCGGGGCGAGGAGATCATGAACGAACTGATCAGCAAGGAGGACTACGAGGAGATTCTCGACTGGCATTACCGGCAGGAGA
GAGAGGAGGATGAGATCCTCATGCGCCCCACCTGCGCGCCCCACTACTACCGCATCGTCCTGCAGAAGGCCAAGATCGAG
GGAACAGGCTTCCAGCGCCGTTCCTTAAGCTTCTCCACCGGCGGCGGCAAGGGATGCATCGCAGCCCAATCCATCTGCCT
GATCGACTGCTTCGGAAACGTGAAGCCCTGCTCCTACTTCCACCGCATTGCCGGCAACGTCAAACAGACCCCCTTCCGCG
AGATCTGGGAAAACGCGGAGATCTTCAAAAACCTGCGCGACTTCGCCTCCTACAAGGGGAAGTGCGGCCAGTGCGAATAC
CTCTCCGTCTGCGGCGGCTGCCGTGCGCGGGCAGACGCGGTGTATGGCGATTACATGGCAGAGGAGCCCTTCTGCAACCA
CATCCCACTCAGGGCCCAACGGGAAGCCGAAAAATAA

Upstream 100 bases:

>100_bases
AACAGACCGATTATCCGCCGGGAATCTGCTTGAGTTTGCCCCTCCCTTCGGATAGGATTCCCCGGACACACGCGGCCGGA
AGCGGCCATCGAGGAGCGCT

Downstream 100 bases:

>100_bases
TCATTTTTTCCTGGATGACAGATAATTTTGCTGTTGACAGATCAAGCCATTCCGGGCTATACAGAAAAGCCTTTTCGCCC
AGGTAGCTCAGTCGGTAGAG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQAEFTPKWIAWETTQKCNLRCVHCRCSSELDSSQGDFSTQEGKTLLREIADFSKPVVVLSGGEPLMRPDIFELARCGTS
LGLRMCMATNGSLVTKETCRDMAGADIKMVSLSLDGSSAAIHDDFRQCPGAFDGVVRAAELFRAHGQKFLINSSFTRRNQ
HDIAATFRLAKQLGATAWYMFMIVPTGRGEEIMNELISKEDYEEILDWHYRQEREEDEILMRPTCAPHYYRIVLQKAKIE
GTGFQRRSLSFSTGGGKGCIAAQSICLIDCFGNVKPCSYFHRIAGNVKQTPFREIWENAEIFKNLRDFASYKGKCGQCEY
LSVCGGCRARADAVYGDYMAEEPFCNHIPLRAQREAEK

Sequences:

>Translated_358_residues
MQAEFTPKWIAWETTQKCNLRCVHCRCSSELDSSQGDFSTQEGKTLLREIADFSKPVVVLSGGEPLMRPDIFELARCGTS
LGLRMCMATNGSLVTKETCRDMAGADIKMVSLSLDGSSAAIHDDFRQCPGAFDGVVRAAELFRAHGQKFLINSSFTRRNQ
HDIAATFRLAKQLGATAWYMFMIVPTGRGEEIMNELISKEDYEEILDWHYRQEREEDEILMRPTCAPHYYRIVLQKAKIE
GTGFQRRSLSFSTGGGKGCIAAQSICLIDCFGNVKPCSYFHRIAGNVKQTPFREIWENAEIFKNLRDFASYKGKCGQCEY
LSVCGGCRARADAVYGDYMAEEPFCNHIPLRAQREAEK
>Mature_358_residues
MQAEFTPKWIAWETTQKCNLRCVHCRCSSELDSSQGDFSTQEGKTLLREIADFSKPVVVLSGGEPLMRPDIFELARCGTS
LGLRMCMATNGSLVTKETCRDMAGADIKMVSLSLDGSSAAIHDDFRQCPGAFDGVVRAAELFRAHGQKFLINSSFTRRNQ
HDIAATFRLAKQLGATAWYMFMIVPTGRGEEIMNELISKEDYEEILDWHYRQEREEDEILMRPTCAPHYYRIVLQKAKIE
GTGFQRRSLSFSTGGGKGCIAAQSICLIDCFGNVKPCSYFHRIAGNVKQTPFREIWENAEIFKNLRDFASYKGKCGQCEY
LSVCGGCRARADAVYGDYMAEEPFCNHIPLRAQREAEK

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40329; Mature: 40329

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAEFTPKWIAWETTQKCNLRCVHCRCSSELDSSQGDFSTQEGKTLLREIADFSKPVVVL
CCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
SGGEPLMRPDIFELARCGTSLGLRMCMATNGSLVTKETCRDMAGADIKMVSLSLDGSSAA
ECCCCCCCCCHHHHHHCCHHHHHEEEEECCCCEEEHHHHHHHCCCCEEEEEEEECCCCCH
IHDDFRQCPGAFDGVVRAAELFRAHGQKFLINSSFTRRNQHDIAATFRLAKQLGATAWYM
HHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
FMIVPTGRGEEIMNELISKEDYEEILDWHYRQEREEDEILMRPTCAPHYYRIVLQKAKIE
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCC
GTGFQRRSLSFSTGGGKGCIAAQSICLIDCFGNVKPCSYFHRIAGNVKQTPFREIWENAE
CCCCEECCCEEECCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHCHHH
IFKNLRDFASYKGKCGQCEYLSVCGGCRARADAVYGDYMAEEPFCNHIPLRAQREAEK
HHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQAEFTPKWIAWETTQKCNLRCVHCRCSSELDSSQGDFSTQEGKTLLREIADFSKPVVVL
CCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
SGGEPLMRPDIFELARCGTSLGLRMCMATNGSLVTKETCRDMAGADIKMVSLSLDGSSAA
ECCCCCCCCCHHHHHHCCHHHHHEEEEECCCCEEEHHHHHHHCCCCEEEEEEEECCCCCH
IHDDFRQCPGAFDGVVRAAELFRAHGQKFLINSSFTRRNQHDIAATFRLAKQLGATAWYM
HHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
FMIVPTGRGEEIMNELISKEDYEEILDWHYRQEREEDEILMRPTCAPHYYRIVLQKAKIE
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCC
GTGFQRRSLSFSTGGGKGCIAAQSICLIDCFGNVKPCSYFHRIAGNVKQTPFREIWENAE
CCCCEECCCEEECCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHCHHH
IFKNLRDFASYKGKCGQCEYLSVCGGCRARADAVYGDYMAEEPFCNHIPLRAQREAEK
HHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]