Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 118581084

GI number: 118581084

Start: 2906397

End: 2907140

Strand: Reverse

Name: yebC [C]

Synonym: Ppro_2673

Alternate gene names: 118581084

Gene position: 2907140-2906397 (Counterclockwise)

Preceding gene: 118581089

Following gene: 118581083

Centisome position: 72.53

GC content: 57.66

Gene sequence:

>744_bases
ATGTCAGGTCATAATAAATGGAGCACGATCAAGCACAAGAAGGGTGCTGCCGACGCCAAGCGCGGCAAGGTTTTTACTAA
GCTCATCAAGGAAATTTCCGTTGCGGCAAAGCTGGGGGGCGGTGACCCGGCGGCCAACCCGCGTCTTCGCACGGCGGTTG
ACAAGGCCAAGGCCGAGAACATGCCCAAGGACAACATCGAGCGCGCCATCAAGAAGGGCGCCGGCGGTATGGAAGGCGTT
ACCTACGAGGAGATCGTCTACGAGGGGTACGGTCCCGGCGGCGCCGCCGTGCTGGTGGAGGTCATGACCGACAATCGCAA
CCGCTCCGTTTCCGAGATTCGCAGTATCTTTACCAAGGCCAACGGCAACATGGGCGAGGCGGGGTGCGTCGCCTGGATGT
TCAGCAAGAAGGGACTGATCACCTTCGACAAGGGGCTTGATTTTGAACAGCTCTTCGAGGCAGCCATTGAGGCTGGCGCC
GAGGACGTGAGTGAAGAGGATGAACAGTTCGAGGTGACCACCGATCCGTCCAGCTTCATTGAGGTGCGCGAGGCGCTGGT
GGCCAAGGGATTCTCCTTTGCCAATGCAGAGGTAACCATGATCCCCCAGACCATGGTAGCCCTGGAAGGGAAGCAGGCCG
AGAGTATGCTCAAGCTGATGGACAAACTGGAGGACAACGACGACGTTCAGAACGTGTACTCCAATTTCGACATCTCGGCC
GATGAGATGGAAAAGATGATGTAG

Upstream 100 bases:

>100_bases
GGACAGCTGTTGAACCGCATGCTAGTATTTCGCGCTTTATATGGCAACAGTTTAAATGTCGTTATTATTTTAACACATAA
ATATCAGGGGAGTAGGGAAG

Downstream 100 bases:

>100_bases
GCCAGGGCGAGAGGGGGCGCGGTGGACACATTCTCCATGGCCGCCTCCCTGTTCTTGCCAATGGCTGTCGGTGATCATGA
GAGTTCTCGGTATCGATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAENMPKDNIERAIKKGAGGMEGV
TYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKANGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGA
EDVSEEDEQFEVTTDPSSFIEVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSNFDISA
DEMEKMM

Sequences:

>Translated_247_residues
MSGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAENMPKDNIERAIKKGAGGMEGV
TYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKANGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGA
EDVSEEDEQFEVTTDPSSFIEVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSNFDISA
DEMEKMM
>Mature_246_residues
SGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAENMPKDNIERAIKKGAGGMEGVT
YEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKANGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGAE
DVSEEDEQFEVTTDPSSFIEVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSNFDISAD
EMEKMM

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=35.2226720647773, Blast_Score=150, Evalue=8e-37,
Organism=Escherichia coli, GI1788171, Length=240, Percent_Identity=52.9166666666667, Blast_Score=264, Evalue=4e-72,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=39.9141630901288, Blast_Score=161, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI17556100, Length=250, Percent_Identity=27.6, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=37.6425855513308, Blast_Score=147, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=27.0916334661355, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2673_PELPD (A1ASF6)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_902334.1
- ProteinModelPortal:   A1ASF6
- SMR:   A1ASF6
- STRING:   A1ASF6
- GeneID:   4574019
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_2673
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   A1ASF6
- ProtClustDB:   PRK00110
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26924; Mature: 26793

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAEN
CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
MPKDNIERAIKKGAGGMEGVTYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKA
CCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHC
NGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGAEDVSEEDEQFEVTTDPSSFI
CCCCCCHHHHHHEECCCCCEEECCCCCHHHHHHHHHHHCHHHHCCCCCCEEEECCHHHHH
EVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSNFDISA
HHHHHHHHCCCCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCH
DEMEKMM
HHHHHCC
>Mature Secondary Structure 
SGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAEN
CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
MPKDNIERAIKKGAGGMEGVTYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFTKA
CCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHC
NGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGAEDVSEEDEQFEVTTDPSSFI
CCCCCCHHHHHHEECCCCCEEECCCCCHHHHHHHHHHHCHHHHCCCCCCEEEECCHHHHH
EVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSNFDISA
HHHHHHHHCCCCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCH
DEMEKMM
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA