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The map label for this gene is psd

Identifier: 118580966

GI number: 118580966

Start: 2766863

End: 2767525

Strand: Reverse

Name: psd

Synonym: Ppro_2554

Alternate gene names: 118580966

Gene position: 2767525-2766863 (Counterclockwise)

Preceding gene: 118580967

Following gene: 118580965

Centisome position: 69.05

GC content: 61.99

Gene sequence:

>663_bases
ATGAAAAACCAGAACACCCCCATCGCCTTCGAAGGCTTCCCTTTCATAGCAGGCTTTGCCGCACTGACACTCCTGACCGC
GCTTTCAGCGGGGAAACTCTGCTCGGCCATCCTGTACGGCTTCTCCGCCCTCTTTGCGCTCCTGACCCTGTTCAGTCTCT
ACTTTTTTCGCAATCCCCAGCGGACGCCGCCTGCCGACGAGCGGGCCGTGGTTGCTCCCGCCGATGGCACCGTGATCGTC
GTCGACCGGGTTCCCGTGACCCCCCTGGGCCATGAGGCGCTCAAAATCAGCATCTTCATGTCGGTCTTCAACGTCCATGT
CAACCGGGTTCCCTTTTCCGGCAGGGTCGTGGAACTGACCCATACTCCGGGCAAGTTCTTCGATGTGCGCGACAGCCGCT
CCTCCTGCGAGAACGAGCGCAGCACCATCGTGCTGGAGACCGTTTCCGGCCTGCGCATGGCGTTCGTGCAGGTGGCCGGC
CTGATCGCGCGGCGCATTGTCTGCTATGCCCGCAACGGGGAGATGCTGGAACGGGGGAAGCGCTACGGACTGATCCGTTT
CGGCTCGCGACTGGATGTGTACCTGCCGCCGGATGTGCAGCCTCTGGTGAAACTGGGGGACAAAACGATAGCAGGCGAGA
CGGTACTGGGACGTCTCGGGTGA

Upstream 100 bases:

>100_bases
CGGGCGTAATGCCTTGCATCCAAAGCCGCCGGTGACAATCTAGCCGGGTGGAGCGGATGGCCCCGCTCGGTGTCACGAAT
TCGGATCTCAGGCAGGTCTG

Downstream 100 bases:

>100_bases
GGGGAGAACTGATCGGATGAATCCCGAAACGCCGCAGGAGCGGATTGAAACAACCGAAAGCATCAAACGGGGGATCTATA
TCCTCCCCAACCTGGTAACC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKNQNTPIAFEGFPFIAGFAALTLLTALSAGKLCSAILYGFSALFALLTLFSLYFFRNPQRTPPADERAVVAPADGTVIV
VDRVPVTPLGHEALKISIFMSVFNVHVNRVPFSGRVVELTHTPGKFFDVRDSRSSCENERSTIVLETVSGLRMAFVQVAG
LIARRIVCYARNGEMLERGKRYGLIRFGSRLDVYLPPDVQPLVKLGDKTIAGETVLGRLG

Sequences:

>Translated_220_residues
MKNQNTPIAFEGFPFIAGFAALTLLTALSAGKLCSAILYGFSALFALLTLFSLYFFRNPQRTPPADERAVVAPADGTVIV
VDRVPVTPLGHEALKISIFMSVFNVHVNRVPFSGRVVELTHTPGKFFDVRDSRSSCENERSTIVLETVSGLRMAFVQVAG
LIARRIVCYARNGEMLERGKRYGLIRFGSRLDVYLPPDVQPLVKLGDKTIAGETVLGRLG
>Mature_220_residues
MKNQNTPIAFEGFPFIAGFAALTLLTALSAGKLCSAILYGFSALFALLTLFSLYFFRNPQRTPPADERAVVAPADGTVIV
VDRVPVTPLGHEALKISIFMSVFNVHVNRVPFSGRVVELTHTPGKFFDVRDSRSSCENERSTIVLETVSGLRMAFVQVAG
LIARRIVCYARNGEMLERGKRYGLIRFGSRLDVYLPPDVQPLVKLGDKTIAGETVLGRLG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PELPD (A1AS38)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_902216.1
- STRING:   A1AS38
- GeneID:   4572452
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_2554
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24106; Mature: 24106

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQNTPIAFEGFPFIAGFAALTLLTALSAGKLCSAILYGFSALFALLTLFSLYFFRNPQ
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTPPADERAVVAPADGTVIVVDRVPVTPLGHEALKISIFMSVFNVHVNRVPFSGRVVELT
CCCCCCCCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
HTPGKFFDVRDSRSSCENERSTIVLETVSGLRMAFVQVAGLIARRIVCYARNGEMLERGK
ECCCCEEECCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCC
RYGLIRFGSRLDVYLPPDVQPLVKLGDKTIAGETVLGRLG
CEEEEEECCEEEEEECCCCHHHHHCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKNQNTPIAFEGFPFIAGFAALTLLTALSAGKLCSAILYGFSALFALLTLFSLYFFRNPQ
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTPPADERAVVAPADGTVIVVDRVPVTPLGHEALKISIFMSVFNVHVNRVPFSGRVVELT
CCCCCCCCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
HTPGKFFDVRDSRSSCENERSTIVLETVSGLRMAFVQVAGLIARRIVCYARNGEMLERGK
ECCCCEEECCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCC
RYGLIRFGSRLDVYLPPDVQPLVKLGDKTIAGETVLGRLG
CEEEEEECCEEEEEECCCCHHHHHCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA