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The map label for this gene is rfbB [H]

Identifier: 118580523

GI number: 118580523

Start: 2267265

End: 2268578

Strand: Reverse

Name: rfbB [H]

Synonym: Ppro_2107

Alternate gene names: 118580523

Gene position: 2268578-2267265 (Counterclockwise)

Preceding gene: 118580524

Following gene: 118580522

Centisome position: 56.6

GC content: 49.62

Gene sequence:

>1314_bases
ATGTCAACTGTCATTACCGTTGAAAATCTCGGCAAGAAGTACACCCTGCGGCACCAGTCCAGCCAGCAACCGTATGTTGC
GCTGCGTGATGTTTTGACTGATAGCGTCAAAAATGCCGGCCGTAAGTTTTCCTCTCTCTTTTTCCGATCCCCGGTCCCTG
GTCCCCAGTCCCCGACTTCAGAAGATTTTTGGGCTCTCAAAGACGTCTCCTTCGAGGTCAAGCAGGGGGACCGCATCGGA
ATCATCGGCCGCAATGGCGCCGGAAAATCAACTCTGCTCAAGATTCTCAGCCGCATCATCGAGCCGACCTCCGGCAGTGT
GCGGATCAAGGGGCGTGTGGCCAGCCTGCTGGAGGTCGGGACCGGTTTTCATCCTGAACTCACCGGGCGGGAAAATATCT
TTCTTAATGGCGCGATACTCGGGATGCATCGGGCCGAGATCAAGAAAAAGTTCGATGAGATCGTGGATTTTGCCGAAATA
GAGAAGTTTCTGGATACCCCGGTGAAACGTTATTCATCCGGGATGTACGTTCGCTTAGCCTTCGCCGTAGCGGCGCATCT
GGAACCGGAGATACTGGTTGTTGATGAAGTGTTGGCAGTGGGGGATGCACAGTTTCAGAAGAAATGTCTGGGGAAGATGG
AGGATGTGTCGGCGAATGAAGGGCGGACGGTGTTGTTTGTCAGTCATAATATGGCGGCGATAAGCTCATTGTGCAGCAGT
GGAGTATTATTGGAAAGGGGAACAATCTTGACGCAGGGGTATGTAGAGGATTGTGTCAAGCTCTACCATACTCGGATGGA
AGAGGTCAGTGTTGCAACCAAACGCGACAGTATTCCTGGCAGGCCTGACCCCAGTCTTAGACTTGAAGATGCCTATCTGC
TCGATAAGAATGATAACTCTGTAAAGGCTATATCACTGTCTGATCCCTTGAAAATTTGCCTTCGTTATCAGTTCAAAACT
GCCATAAGAGGGTTGATTGTGCACTTGGGAGTTTACAACAGTGTTGAAACCGGAGTCCTCCGCTTCGAATCTTCAGTTTT
TGAGGAGTTGCCAGCATATGGCGTAATTACATGCCAATGCAATAGCATCAGGCTCGTTCCAGGTCGCTACAAAGTTAACA
TCTGCTTCTTGCGCGGTAGTGAAGTGCTGGAATATATCCCCAATGCACTTTATTTTGATGTGTACGTTTCAGATTACTTC
GGGAACGGAAAACTTCCAGATTTTCGCCTATGTGAGGTGTTAGTTCCACACGAGTGGGTAGTTAAAAAGATTGATGACGA
AGCAAGTCGAGGCAAAGAGGTGGGCTGCGATTAG

Upstream 100 bases:

>100_bases
TAAAGATGTCTTGTTTTCCAGTTTGCTACCATTTGCTGTTTGATTCTCTTTGCGCCTTAGCGTCTTGAGCGAGCGGCGCG
AGCGGGCGTGAGATAAAAGT

Downstream 100 bases:

>100_bases
ACCTCATTGCGAAACAGCAGACGAAAATGAAATTTAAGCTCAAAGATTTTAATAATGATGCAAAATTCAATGTTTCCGCT
CTACCCCAAAGAGATGCATT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSTVITVENLGKKYTLRHQSSQQPYVALRDVLTDSVKNAGRKFSSLFFRSPVPGPQSPTSEDFWALKDVSFEVKQGDRIG
IIGRNGAGKSTLLKILSRIIEPTSGSVRIKGRVASLLEVGTGFHPELTGRENIFLNGAILGMHRAEIKKKFDEIVDFAEI
EKFLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAQFQKKCLGKMEDVSANEGRTVLFVSHNMAAISSLCSS
GVLLERGTILTQGYVEDCVKLYHTRMEEVSVATKRDSIPGRPDPSLRLEDAYLLDKNDNSVKAISLSDPLKICLRYQFKT
AIRGLIVHLGVYNSVETGVLRFESSVFEELPAYGVITCQCNSIRLVPGRYKVNICFLRGSEVLEYIPNALYFDVYVSDYF
GNGKLPDFRLCEVLVPHEWVVKKIDDEASRGKEVGCD

Sequences:

>Translated_437_residues
MSTVITVENLGKKYTLRHQSSQQPYVALRDVLTDSVKNAGRKFSSLFFRSPVPGPQSPTSEDFWALKDVSFEVKQGDRIG
IIGRNGAGKSTLLKILSRIIEPTSGSVRIKGRVASLLEVGTGFHPELTGRENIFLNGAILGMHRAEIKKKFDEIVDFAEI
EKFLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAQFQKKCLGKMEDVSANEGRTVLFVSHNMAAISSLCSS
GVLLERGTILTQGYVEDCVKLYHTRMEEVSVATKRDSIPGRPDPSLRLEDAYLLDKNDNSVKAISLSDPLKICLRYQFKT
AIRGLIVHLGVYNSVETGVLRFESSVFEELPAYGVITCQCNSIRLVPGRYKVNICFLRGSEVLEYIPNALYFDVYVSDYF
GNGKLPDFRLCEVLVPHEWVVKKIDDEASRGKEVGCD
>Mature_436_residues
STVITVENLGKKYTLRHQSSQQPYVALRDVLTDSVKNAGRKFSSLFFRSPVPGPQSPTSEDFWALKDVSFEVKQGDRIGI
IGRNGAGKSTLLKILSRIIEPTSGSVRIKGRVASLLEVGTGFHPELTGRENIFLNGAILGMHRAEIKKKFDEIVDFAEIE
KFLDTPVKRYSSGMYVRLAFAVAAHLEPEILVVDEVLAVGDAQFQKKCLGKMEDVSANEGRTVLFVSHNMAAISSLCSSG
VLLERGTILTQGYVEDCVKLYHTRMEEVSVATKRDSIPGRPDPSLRLEDAYLLDKNDNSVKAISLSDPLKICLRYQFKTA
IRGLIVHLGVYNSVETGVLRFESSVFEELPAYGVITCQCNSIRLVPGRYKVNICFLRGSEVLEYIPNALYFDVYVSDYFG
NGKLPDFRLCEVLVPHEWVVKKIDDEASRGKEVGCD

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=197, Percent_Identity=27.9187817258883, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI153792144, Length=205, Percent_Identity=26.3414634146341, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI6005701, Length=199, Percent_Identity=27.1356783919598, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI27477115, Length=199, Percent_Identity=27.1356783919598, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27262624, Length=204, Percent_Identity=27.9411764705882, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI27262626, Length=204, Percent_Identity=27.9411764705882, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI31657092, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI105990541, Length=215, Percent_Identity=26.9767441860465, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI30795238, Length=195, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI27881501, Length=195, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI4505771, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI42741659, Length=243, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI47078218, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI45446740, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI73747915, Length=228, Percent_Identity=24.1228070175439, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI9955963, Length=237, Percent_Identity=24.4725738396624, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=24.390243902439, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=296, Percent_Identity=23.9864864864865, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=26.2626262626263, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=211, Percent_Identity=22.7488151658768, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=205, Percent_Identity=27.3170731707317, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=24.6376811594203, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=280, Percent_Identity=27.5, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=25.6756756756757, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=25.3807106598985, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=25.4807692307692, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=212, Percent_Identity=25.4716981132075, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=22.5490196078431, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI48995001, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=26.865671641791, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=26.3888888888889, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=192, Percent_Identity=22.9166666666667, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=206, Percent_Identity=27.6699029126214, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=28.3261802575107, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=200, Percent_Identity=26.5, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=26.2135922330097, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=26.2135922330097, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=26.2135922330097, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=233, Percent_Identity=25.3218884120172, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=222, Percent_Identity=25.2252252252252, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=29.6116504854369, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007184, Length=212, Percent_Identity=25.4716981132075, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281363262, Length=248, Percent_Identity=27.8225806451613, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221500365, Length=212, Percent_Identity=25.4716981132075, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24653245, Length=248, Percent_Identity=27.8225806451613, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24659289, Length=277, Percent_Identity=26.7148014440433, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28573571, Length=202, Percent_Identity=23.7623762376238, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=202, Percent_Identity=23.7623762376238, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221512771, Length=202, Percent_Identity=26.7326732673267, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 48619; Mature: 48487

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVITVENLGKKYTLRHQSSQQPYVALRDVLTDSVKNAGRKFSSLFFRSPVPGPQSPTS
CCEEEEHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EDFWALKDVSFEVKQGDRIGIIGRNGAGKSTLLKILSRIIEPTSGSVRIKGRVASLLEVG
CCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHC
TGFHPELTGRENIFLNGAILGMHRAEIKKKFDEIVDFAEIEKFLDTPVKRYSSGMYVRLA
CCCCCCCCCCCEEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEE
FAVAAHLEPEILVVDEVLAVGDAQFQKKCLGKMEDVSANEGRTVLFVSHNMAAISSLCSS
EHHHHHCCCCEEEEEHHHHHCCHHHHHHHHCCHHCCCCCCCCEEEEEECCHHHHHHHHHC
GVLLERGTILTQGYVEDCVKLYHTRMEEVSVATKRDSIPGRPDPSLRLEDAYLLDKNDNS
CEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCC
VKAISLSDPLKICLRYQFKTAIRGLIVHLGVYNSVETGVLRFESSVFEELPAYGVITCQC
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
NSIRLVPGRYKVNICFLRGSEVLEYIPNALYFDVYVSDYFGNGKLPDFRLCEVLVPHEWV
CCEEEECCEEEEEEEEEECCHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHEEECCCHHH
VKKIDDEASRGKEVGCD
HHHHCCHHHCCCCCCCC
>Mature Secondary Structure 
STVITVENLGKKYTLRHQSSQQPYVALRDVLTDSVKNAGRKFSSLFFRSPVPGPQSPTS
CEEEEHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EDFWALKDVSFEVKQGDRIGIIGRNGAGKSTLLKILSRIIEPTSGSVRIKGRVASLLEVG
CCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHC
TGFHPELTGRENIFLNGAILGMHRAEIKKKFDEIVDFAEIEKFLDTPVKRYSSGMYVRLA
CCCCCCCCCCCEEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEE
FAVAAHLEPEILVVDEVLAVGDAQFQKKCLGKMEDVSANEGRTVLFVSHNMAAISSLCSS
EHHHHHCCCCEEEEEHHHHHCCHHHHHHHHCCHHCCCCCCCCEEEEEECCHHHHHHHHHC
GVLLERGTILTQGYVEDCVKLYHTRMEEVSVATKRDSIPGRPDPSLRLEDAYLLDKNDNS
CEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCC
VKAISLSDPLKICLRYQFKTAIRGLIVHLGVYNSVETGVLRFESSVFEELPAYGVITCQC
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
NSIRLVPGRYKVNICFLRGSEVLEYIPNALYFDVYVSDYFGNGKLPDFRLCEVLVPHEWV
CCEEEECCEEEEEEEEEECCHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHEEECCCHHH
VKKIDDEASRGKEVGCD
HHHHCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]