| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is pdtaS [H]
Identifier: 118580388
GI number: 118580388
Start: 2114658
End: 2117105
Strand: Direct
Name: pdtaS [H]
Synonym: Ppro_1972
Alternate gene names: 118580388
Gene position: 2114658-2117105 (Clockwise)
Preceding gene: 118580387
Following gene: 118580389
Centisome position: 52.76
GC content: 58.99
Gene sequence:
>2448_bases ATGAAAATCCGCTCACTCCGTCATCTTCTTACCATCCGCTCAGCCTGGGTAGCCGTGGTTCCCTTCCTCTTCTCGGCGGT TCTGGGGTGGTTCTGGCTGCGCCCCCAGGTCATCGCCGACTCGGAAGAACATCAACGTCAACTGGCCGCGGCAATCGCGT CGCGCACGGAAGAGTATCTCGTGGCATCATCCCAGGAGATCACCAGAACGGCCTCGGTCGTCGCCAGGGGGGTCGTCAGT CCATCCGCGACCCAGGAGTATCTGGACACCGTGCTGACATCGTCTCGGAATCTGGCTTCCCTTGCCTTCACCGATGCGGC CGGCCGCATCTCGGCCATTGCTCTTCCCGGCGAAAAAGCGCCCCTGGGCCGGGAGATGATCGGGAACGATCTCTCGCTCA CAAACGCGGTGCGCCAGGTGCGCGCCTCCGGCAGACCGGCATGGTCCGATGCGTATCTCTCCCCGATGGGAGGAGGGCTG ACCGTGGCCTACGCCACTCCGGCAGCCAAAGGCGTGGCGCTGGGAGAGATCTCCCTCTCCCAGCTGGGCATCTTCCTCAG GGGGATCGCCGAGCAGGGGAAACAGTCGGTTTTCATCATCGATCGGCGTGGACAGGTAATCGCCGACCAGGAGGGGCGCT TCACCGCGCGGCAGTACAACCTGACCAACCTGGAGATCGTGAGGGAGGGGATTGCCTCCAACAAGCCGGTAACCCGCAGT TTTTCCTTTAACGGCGTGAAGGTGGTGGGCTGCCTGATCAGGGCGCCGATTCTCAACTGGAACATCCTGGTTGCTTCCCC CGTCGAGCTGGCCTACCGTTCGGCGCTCACCACCACCGGCATTTTCGCGACGGCGCTCTGTCTGGCGCTGCTGATGGCGT ATGGCCTGAACCTGATCATGTCACACTCCCTGGCAACCAGATTGGAGGAACTGGTCACCCACGCCCGCAGAGTCGAGTCG GGTGTGGAGGCAGGCGACTGGCCGAAAGGCCCGGTGAGTGAGTTCAACCTGCTCGGCGAGGCGCTCCAGTCCATGGCCGA TGCGCTCCACGAGCGGGAAAACCGCCTGAACGCGCAGCTGTTTTTTTTGCAGCAGTTGATGGATTCCATCCCCGTTCCGG TCTATTACAAGGATGCCGGCGGGCTGTATCTGGGATGCAACGCGGCGTTCGAAGTGTTAATAGGTATGCCGAGATGCGAC ATCGTGGGGAAAACCGTGCACAACGTGGCTCACAGGGAGCGTGCCGAAAAACATCACGAGGCGGATACGGCCCTGCTCCG CCATCCCGGCGTGCAGACATATGAGACAAGCGGTATGTATGGTGACGGCGAATTTCACGACGTTATTTTCAACAAGGCGA CTTTTTTTGACGCTAACAACCGCGTGGCGGGAATTGTTGGAGCCATCATCGACATCACCGAGCTCAGGAAAGCCGAAGAA GAGCTCAGGGAGAGCGAGGAGAAGTTCCGGGTGCTGGCGGAGACCTCCCCGACCGCCATTGTCGTGTATCAGGGAGAAAT GCTGGTCTACGTCAATCCTTCCACCGTCCGTTTGTTCGGCTACGACCAGGCAGAACTGCTGACCATGAAATTCTGGGAGT GGGCTCATCCGGAATGCCGAACGACCATAAGGGAGCGAGGGTTGGCGCGACTCCGGGGTGAGCCGGTTCCAAACCAGTAC GAGCTGAAATTCGTCAAAAAAAACGGTGAAGAGGGATGGGTGATCGTTTCCGCCGGCAGGATCGAATATGGGCGCAGACC GGGAGGCATAGCCACCTTTGTGGATATCACCGAGGCTAAGCGTGCCGAAGAAAGAATGAAAACAGCCCTGACGGAAAAGG AAGTGCTGCTCAAGGAGGTCCACCACCGGGTCAAAAACAACATGCAGATCATCTCCTCGCTGCTGGAACTGCAGTCGGAT TCCATTGTCGACGAACGGACGCGAAGCTGTCTCCGGGAAAGCCAGAACCGCGTCAGGTCCATGGCCCTTATTCACGAACG ACTCTACCGATCGAAAGATTTTTCCGCCATTGATGTGGGAGAGTACGTCAGAGACCTGTCCCAGTACCTGTTCGATGCCT ATGTCGTTGATAGCGAACGGATTTCCCTGAACATCCAGTCTGGCAACGTGGTTCTTGAGATCAGCCGGGCGGTGCCCTGT GGCCTGATCATCAACGAACTTATTTCCAACTCGCTGAAGCATGCCTTTCCCGACGGACGGAGGGGTGACATTTTCGTCCG CATGAGCAGTGACGCGGAGATGATCACCCTGGAAGTCGCCGATACCGGCGTGGGCATGCCGGTTGGCCTGGATTTCAAAA ACGCCGAAACACTGGGGTTGCAACTGGTGAACCTTCTGGCCAGGCAGTTGGGCGGTCATTTCTCCTGCCAGGGAGGGCAC GAGGGGGCGGTAACAACCGTTACATTCCCACGACAGTCGTCCGCCTGA
Upstream 100 bases:
>100_bases CCAGAGGAAGATCGTCCTGGATCGTTTTGGCGACGCCAGGAGCACGACCTTCATCACCGTGGTTAAAGACGGTCGTTTCG TAACCCTCGAGTAATCAGCA
Downstream 100 bases:
>100_bases ATCCGTCGCCGGGCAGGTTGGTCATGGCAAGAGTTCTGGGCGCCGGGATATCCGGCGGAATGGCGCTAAAACTGGTTATT CTGCTGAGGTTCGGCTGGAA
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MKIRSLRHLLTIRSAWVAVVPFLFSAVLGWFWLRPQVIADSEEHQRQLAAAIASRTEEYLVASSQEITRTASVVARGVVS PSATQEYLDTVLTSSRNLASLAFTDAAGRISAIALPGEKAPLGREMIGNDLSLTNAVRQVRASGRPAWSDAYLSPMGGGL TVAYATPAAKGVALGEISLSQLGIFLRGIAEQGKQSVFIIDRRGQVIADQEGRFTARQYNLTNLEIVREGIASNKPVTRS FSFNGVKVVGCLIRAPILNWNILVASPVELAYRSALTTTGIFATALCLALLMAYGLNLIMSHSLATRLEELVTHARRVES GVEAGDWPKGPVSEFNLLGEALQSMADALHERENRLNAQLFFLQQLMDSIPVPVYYKDAGGLYLGCNAAFEVLIGMPRCD IVGKTVHNVAHRERAEKHHEADTALLRHPGVQTYETSGMYGDGEFHDVIFNKATFFDANNRVAGIVGAIIDITELRKAEE ELRESEEKFRVLAETSPTAIVVYQGEMLVYVNPSTVRLFGYDQAELLTMKFWEWAHPECRTTIRERGLARLRGEPVPNQY ELKFVKKNGEEGWVIVSAGRIEYGRRPGGIATFVDITEAKRAEERMKTALTEKEVLLKEVHHRVKNNMQIISSLLELQSD SIVDERTRSCLRESQNRVRSMALIHERLYRSKDFSAIDVGEYVRDLSQYLFDAYVVDSERISLNIQSGNVVLEISRAVPC GLIINELISNSLKHAFPDGRRGDIFVRMSSDAEMITLEVADTGVGMPVGLDFKNAETLGLQLVNLLARQLGGHFSCQGGH EGAVTTVTFPRQSSA
Sequences:
>Translated_815_residues MKIRSLRHLLTIRSAWVAVVPFLFSAVLGWFWLRPQVIADSEEHQRQLAAAIASRTEEYLVASSQEITRTASVVARGVVS PSATQEYLDTVLTSSRNLASLAFTDAAGRISAIALPGEKAPLGREMIGNDLSLTNAVRQVRASGRPAWSDAYLSPMGGGL TVAYATPAAKGVALGEISLSQLGIFLRGIAEQGKQSVFIIDRRGQVIADQEGRFTARQYNLTNLEIVREGIASNKPVTRS FSFNGVKVVGCLIRAPILNWNILVASPVELAYRSALTTTGIFATALCLALLMAYGLNLIMSHSLATRLEELVTHARRVES GVEAGDWPKGPVSEFNLLGEALQSMADALHERENRLNAQLFFLQQLMDSIPVPVYYKDAGGLYLGCNAAFEVLIGMPRCD IVGKTVHNVAHRERAEKHHEADTALLRHPGVQTYETSGMYGDGEFHDVIFNKATFFDANNRVAGIVGAIIDITELRKAEE ELRESEEKFRVLAETSPTAIVVYQGEMLVYVNPSTVRLFGYDQAELLTMKFWEWAHPECRTTIRERGLARLRGEPVPNQY ELKFVKKNGEEGWVIVSAGRIEYGRRPGGIATFVDITEAKRAEERMKTALTEKEVLLKEVHHRVKNNMQIISSLLELQSD SIVDERTRSCLRESQNRVRSMALIHERLYRSKDFSAIDVGEYVRDLSQYLFDAYVVDSERISLNIQSGNVVLEISRAVPC GLIINELISNSLKHAFPDGRRGDIFVRMSSDAEMITLEVADTGVGMPVGLDFKNAETLGLQLVNLLARQLGGHFSCQGGH EGAVTTVTFPRQSSA >Mature_815_residues MKIRSLRHLLTIRSAWVAVVPFLFSAVLGWFWLRPQVIADSEEHQRQLAAAIASRTEEYLVASSQEITRTASVVARGVVS PSATQEYLDTVLTSSRNLASLAFTDAAGRISAIALPGEKAPLGREMIGNDLSLTNAVRQVRASGRPAWSDAYLSPMGGGL TVAYATPAAKGVALGEISLSQLGIFLRGIAEQGKQSVFIIDRRGQVIADQEGRFTARQYNLTNLEIVREGIASNKPVTRS FSFNGVKVVGCLIRAPILNWNILVASPVELAYRSALTTTGIFATALCLALLMAYGLNLIMSHSLATRLEELVTHARRVES GVEAGDWPKGPVSEFNLLGEALQSMADALHERENRLNAQLFFLQQLMDSIPVPVYYKDAGGLYLGCNAAFEVLIGMPRCD IVGKTVHNVAHRERAEKHHEADTALLRHPGVQTYETSGMYGDGEFHDVIFNKATFFDANNRVAGIVGAIIDITELRKAEE ELRESEEKFRVLAETSPTAIVVYQGEMLVYVNPSTVRLFGYDQAELLTMKFWEWAHPECRTTIRERGLARLRGEPVPNQY ELKFVKKNGEEGWVIVSAGRIEYGRRPGGIATFVDITEAKRAEERMKTALTEKEVLLKEVHHRVKNNMQIISSLLELQSD SIVDERTRSCLRESQNRVRSMALIHERLYRSKDFSAIDVGEYVRDLSQYLFDAYVVDSERISLNIQSGNVVLEISRAVPC GLIINELISNSLKHAFPDGRRGDIFVRMSSDAEMITLEVADTGVGMPVGLDFKNAETLGLQLVNLLARQLGGHFSCQGGH EGAVTTVTFPRQSSA
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: COG3920
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 90053; Mature: 90053
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRSLRHLLTIRSAWVAVVPFLFSAVLGWFWLRPQVIADSEEHQRQLAAAIASRTEEYL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCHHHH VASSQEITRTASVVARGVVSPSATQEYLDTVLTSSRNLASLAFTDAAGRISAIALPGEKA HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCC PLGREMIGNDLSLTNAVRQVRASGRPAWSDAYLSPMGGGLTVAYATPAAKGVALGEISLS CCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCHH QLGIFLRGIAEQGKQSVFIIDRRGQVIADQEGRFTARQYNLTNLEIVREGIASNKPVTRS HHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEE FSFNGVKVVGCLIRAPILNWNILVASPVELAYRSALTTTGIFATALCLALLMAYGLNLIM CCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SHSLATRLEELVTHARRVESGVEAGDWPKGPVSEFNLLGEALQSMADALHERENRLNAQL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFLQQLMDSIPVPVYYKDAGGLYLGCNAAFEVLIGMPRCDIVGKTVHNVAHRERAEKHHE HHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADTALLRHPGVQTYETSGMYGDGEFHDVIFNKATFFDANNRVAGIVGAIIDITELRKAEE HHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH ELRESEEKFRVLAETSPTAIVVYQGEMLVYVNPSTVRLFGYDQAELLTMKFWEWAHPECR HHHHHHHHHEEEEECCCCEEEEEECCEEEEECCCEEEEEECCHHHHHHHHHHCCCCCHHH TTIRERGLARLRGEPVPNQYELKFVKKNGEEGWVIVSAGRIEYGRRPGGIATFVDITEAK HHHHHCCHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCEECCCCCCCEEEEEEHHHHH RAEERMKTALTEKEVLLKEVHHRVKNNMQIISSLLELQSDSIVDERTRSCLRESQNRVRS HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH MALIHERLYRSKDFSAIDVGEYVRDLSQYLFDAYVVDSERISLNIQSGNVVLEISRAVPC HHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHEEECCEEEEEEECCCEEEEECCCCCH GLIINELISNSLKHAFPDGRRGDIFVRMSSDAEMITLEVADTGVGMPVGLDFKNAETLGL HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHHH QLVNLLARQLGGHFSCQGGHEGAVTTVTFPRQSSA HHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCC >Mature Secondary Structure MKIRSLRHLLTIRSAWVAVVPFLFSAVLGWFWLRPQVIADSEEHQRQLAAAIASRTEEYL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCHHHH VASSQEITRTASVVARGVVSPSATQEYLDTVLTSSRNLASLAFTDAAGRISAIALPGEKA HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCC PLGREMIGNDLSLTNAVRQVRASGRPAWSDAYLSPMGGGLTVAYATPAAKGVALGEISLS CCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCHH QLGIFLRGIAEQGKQSVFIIDRRGQVIADQEGRFTARQYNLTNLEIVREGIASNKPVTRS HHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEE FSFNGVKVVGCLIRAPILNWNILVASPVELAYRSALTTTGIFATALCLALLMAYGLNLIM CCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SHSLATRLEELVTHARRVESGVEAGDWPKGPVSEFNLLGEALQSMADALHERENRLNAQL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFLQQLMDSIPVPVYYKDAGGLYLGCNAAFEVLIGMPRCDIVGKTVHNVAHRERAEKHHE HHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADTALLRHPGVQTYETSGMYGDGEFHDVIFNKATFFDANNRVAGIVGAIIDITELRKAEE HHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH ELRESEEKFRVLAETSPTAIVVYQGEMLVYVNPSTVRLFGYDQAELLTMKFWEWAHPECR HHHHHHHHHEEEEECCCCEEEEEECCEEEEECCCEEEEEECCHHHHHHHHHHCCCCCHHH TTIRERGLARLRGEPVPNQYELKFVKKNGEEGWVIVSAGRIEYGRRPGGIATFVDITEAK HHHHHCCHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCEECCCCCCCEEEEEEHHHHH RAEERMKTALTEKEVLLKEVHHRVKNNMQIISSLLELQSDSIVDERTRSCLRESQNRVRS HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH MALIHERLYRSKDFSAIDVGEYVRDLSQYLFDAYVVDSERISLNIQSGNVVLEISRAVPC HHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHEEECCEEEEEEECCCEEEEECCCCCH GLIINELISNSLKHAFPDGRRGDIFVRMSSDAEMITLEVADTGVGMPVGLDFKNAETLGL HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHHH QLVNLLARQLGGHFSCQGGHEGAVTTVTFPRQSSA HHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]