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The map label for this gene is ybhF [H]

Identifier: 118580375

GI number: 118580375

Start: 2104397

End: 2104831

Strand: Direct

Name: ybhF [H]

Synonym: Ppro_1958

Alternate gene names: 118580375

Gene position: 2104397-2104831 (Clockwise)

Preceding gene: 118580361

Following gene: 118580376

Centisome position: 52.5

GC content: 58.16

Gene sequence:

>435_bases
ATGGAAACGCGCCATACAGATACATCTACATCCCCTAAACATCCCGTATTCATCGAGGCCAGGGAATTATCCAAGCGGTT
CGGCGATATCGCCGCCGTTGACAGGGTATCCTTCGAGGTAAACCAGGGAGAGCTCTTTGGATTTCTCGGCCCCAACGGCG
CCGGCAAAACCACCACGATCAACATGCTCACCGGCCTTGCAAGACCGGATTCGGGGCAGATCCGTCTTGGCGGTCTGGAC
TGCACGGGAAATCCGAAGGCGGCCCAGCATCTGATCGGCGTCGTCCCGGACGAGAGCAACCTCTATCCCGAGCTGTCCGG
ATTCGATAACCTCTGCTTCTGCGCAGCTCTGTACGGCATGCGCCGGGACGAACGCCGCGCCCTACTGGAAGAGTTTGACC
TAAAGAATGCACAGGAGCGGGACGCGATACTCTGA

Upstream 100 bases:

>100_bases
ATTATCCACGGTTGTTTACGCTGCGTACGGTTGGTACTATCCGTGCATACAATAGCTAAATCTATACAAAAGAGTCGCCC
TGCCATCAATAGGCTCATAC

Downstream 100 bases:

>100_bases
AAGGGCATTTTCATGACCTACGTTGAACTGCAGGAAGCGCTGCTGGTGTTCGGGATTGGCGAGCGTGCCTCACGCGGGGA
GATCAGGGCACGGCACCGCC

Product: multidrug ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
METRHTDTSTSPKHPVFIEARELSKRFGDIAAVDRVSFEVNQGELFGFLGPNGAGKTTTINMLTGLARPDSGQIRLGGLD
CTGNPKAAQHLIGVVPDESNLYPELSGFDNLCFCAALYGMRRDERRALLEEFDLKNAQERDAIL

Sequences:

>Translated_144_residues
METRHTDTSTSPKHPVFIEARELSKRFGDIAAVDRVSFEVNQGELFGFLGPNGAGKTTTINMLTGLARPDSGQIRLGGLD
CTGNPKAAQHLIGVVPDESNLYPELSGFDNLCFCAALYGMRRDERRALLEEFDLKNAQERDAIL
>Mature_144_residues
METRHTDTSTSPKHPVFIEARELSKRFGDIAAVDRVSFEVNQGELFGFLGPNGAGKTTTINMLTGLARPDSGQIRLGGLD
CTGNPKAAQHLIGVVPDESNLYPELSGFDNLCFCAALYGMRRDERRALLEEFDLKNAQERDAIL

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=104, Percent_Identity=40.3846153846154, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI105990541, Length=115, Percent_Identity=34.7826086956522, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI27477115, Length=100, Percent_Identity=43, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI6005701, Length=100, Percent_Identity=42, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI153792144, Length=95, Percent_Identity=36.8421052631579, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI116734710, Length=111, Percent_Identity=35.1351351351351, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI45446740, Length=132, Percent_Identity=31.0606060606061, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI21536376, Length=109, Percent_Identity=34.8623853211009, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI47078218, Length=132, Percent_Identity=31.0606060606061, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081782, Length=123, Percent_Identity=43.9024390243902, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI48994943, Length=143, Percent_Identity=35.6643356643357, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI87081709, Length=128, Percent_Identity=32.8125, Blast_Score=76, Evalue=8e-16,
Organism=Escherichia coli, GI48995001, Length=104, Percent_Identity=42.3076923076923, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1788897, Length=95, Percent_Identity=43.1578947368421, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1787712, Length=114, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1789593, Length=129, Percent_Identity=34.8837209302326, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI87081791, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1786319, Length=110, Percent_Identity=31.8181818181818, Blast_Score=66, Evalue=7e-13,
Organism=Escherichia coli, GI1787792, Length=137, Percent_Identity=29.1970802919708, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1788761, Length=96, Percent_Identity=32.2916666666667, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1790467, Length=106, Percent_Identity=28.3018867924528, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI2367384, Length=60, Percent_Identity=45, Blast_Score=61, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=107, Percent_Identity=38.3177570093458, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=107, Percent_Identity=38.3177570093458, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=107, Percent_Identity=38.3177570093458, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=101, Percent_Identity=36.6336633663366, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666092, Length=124, Percent_Identity=35.4838709677419, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221512771, Length=104, Percent_Identity=37.5, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648314, Length=130, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573571, Length=109, Percent_Identity=33.9449541284404, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643674, Length=115, Percent_Identity=36.5217391304348, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28573573, Length=109, Percent_Identity=33.9449541284404, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28574150, Length=121, Percent_Identity=37.1900826446281, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007328, Length=121, Percent_Identity=37.1900826446281, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 15813; Mature: 15813

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRHTDTSTSPKHPVFIEARELSKRFGDIAAVDRVSFEVNQGELFGFLGPNGAGKTTTI
CCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHEEEEEECCCEEEEEECCCCCCCEEEE
NMLTGLARPDSGQIRLGGLDCTGNPKAAQHLIGVVPDESNLYPELSGFDNLCFCAALYGM
EEHHCCCCCCCCCEEEECCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHC
RRDERRALLEEFDLKNAQERDAIL
CCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
METRHTDTSTSPKHPVFIEARELSKRFGDIAAVDRVSFEVNQGELFGFLGPNGAGKTTTI
CCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHEEEEEECCCEEEEEECCCCCCCEEEE
NMLTGLARPDSGQIRLGGLDCTGNPKAAQHLIGVVPDESNLYPELSGFDNLCFCAALYGM
EEHHCCCCCCCCCEEEECCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHC
RRDERRALLEEFDLKNAQERDAIL
CCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]