BacMap

Definition	Pelobacter propionicus DSM 2379 chromosome, complete genome.
Accession	NC_008609
Length	4,008,000

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The map label for this gene is yocR [H]

Identifier: 118580212

GI number: 118580212

Start: 1917740

End: 1919098

Strand: Reverse

Name: yocR [H]

Synonym: Ppro_1792

Alternate gene names: 118580212

Gene position: 1919098-1917740 (Counterclockwise)

Preceding gene: 118580214

Following gene: 118580211

Centisome position: 47.88

GC content: 60.78

Gene sequence:

>1359_bases
ATGGCACGGTATCACGGCACACCGAAACGCGGCCACTGGAGCAGTCGCCTCGGCTTTATCATGGCCTCGGCCGGTTCGGC
GGTCGGCCTGGGCAATATCTGGAAATTCCCCTACATCACCGGCATGCACGGCGGAGGGGCCTTTGTGCTCTTCTTTCTCA
TCTGCATTGCGCTGATCGGGATTCCGCTCATGATCGCCGAGATGGTGATCGGCCGCCACACCCACAAGGACCCGGTGGGC
GCCTTCCGCACGCTGGCCGGCGGTCCCTGGAGCATGGTCGGTTGGCTGGGGGTGACAGCCGGGTTCGTAATCCTCTCCTA
CTACTGCGTGGTGGCCGGTTGGGCCGTAAACTACCTCTGGCTGGCGATCAAGGGAACCTTTGGCGGCGGGCATATCCAGC
AGGTACCGGAACTGTTCAGCTCTCTTCTGGCCAGTGACCTGTCCCAACTGTTCTGGCAGGCGCTCTTCATGGGGGCTACG
ATCTGGATCGTCCTGGGCGGTGTCAGCGATGGCCTCGAACGGGCCAGCAAGCTGATGATGCCGGTTCTGTTCCTGATCCT
GATTGTCCTGACGGTTCGGGGGCTTTTCTCACCCGGCGGTCCCCGGGCGCTTTCCTTCCTGTTCACTCCAAACTGGCGGA
TGCTGGATGCAGCGGCAATGCTCGAAGCCATGGGGCACGCCTTCTTCACCCTGTCGCTGGGCATGGGCGCCATGCTCACC
TACGGCAGCTACGCGAACGAGCGGACCAACATACCCAATGTGGCCATCACCGTATCGATCATGGATACCTGCGTGGCACT
GCTGTCGGGCATTGCCATCTTCTCCATCGTCTTCACCTATGGCATGGCGCCCGCCGCCGGACCGGGCCTGGTCTTCAAGA
CCCTGCCCATACTCTTCAGCCAGATGCAGGGAGGCACCTTTGTCGCCATCCTCTTCTTCCTGCTGCTGGTCTTTGCCGCC
CTCACATCCAGCATCTCGCTTTTGGAGGTGGTGGTGGCCTATTACTGCGACGAGAAGAAGTGGCAACGCCGGACGGCGAC
GCTGGTGATGGGGTTCCTGATCTTCCTGCTCGGCGTCCCCTCGGCCCTCTCCAACCATCTGCTGGCCGATGTCCACTTCA
TTGGCGGACGCAATTTCCTCGACTCCATCGACCTGGTGGCCACGAACTACATCCTGCCCCTGGGAGCCCTGTTCATTGCC
ATCTTCACCGGCTGGGTCATGACCACCCGCGTGGCGCGGGGCGAGATCGAGAAGGGGACGGTCAATTTCCACTTCTATCC
GCTCTGGCATTTTCTGATCAAATACGTAAGCCCGATCATGGTGGCAATCCTCTTCCTCTCCAAGATCGGGCTGATATAG

Upstream 100 bases:

>100_bases
GCCCTAACACGTTGACAGTGGTGGTGTGCTGGGGTAGGGTGGACGAGTTTTGAACTCGATGACTCATGGCTGCCGCGCAG
CGAGGCAACAGGGTAGATTC

Downstream 100 bases:

>100_bases
GGCACAGCCCCCACTGAGGCGCCCTGGTGCGCACGGAGCAACGGACACCCCAGAACCGGTTCAAGCAACTATCAACACCA
ATCAAACGACAAGGATATCC

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MARYHGTPKRGHWSSRLGFIMASAGSAVGLGNIWKFPYITGMHGGGAFVLFFLICIALIGIPLMIAEMVIGRHTHKDPVG
AFRTLAGGPWSMVGWLGVTAGFVILSYYCVVAGWAVNYLWLAIKGTFGGGHIQQVPELFSSLLASDLSQLFWQALFMGAT
IWIVLGGVSDGLERASKLMMPVLFLILIVLTVRGLFSPGGPRALSFLFTPNWRMLDAAAMLEAMGHAFFTLSLGMGAMLT
YGSYANERTNIPNVAITVSIMDTCVALLSGIAIFSIVFTYGMAPAAGPGLVFKTLPILFSQMQGGTFVAILFFLLLVFAA
LTSSISLLEVVVAYYCDEKKWQRRTATLVMGFLIFLLGVPSALSNHLLADVHFIGGRNFLDSIDLVATNYILPLGALFIA
IFTGWVMTTRVARGEIEKGTVNFHFYPLWHFLIKYVSPIMVAILFLSKIGLI

Sequences:

>Translated_452_residues
MARYHGTPKRGHWSSRLGFIMASAGSAVGLGNIWKFPYITGMHGGGAFVLFFLICIALIGIPLMIAEMVIGRHTHKDPVG
AFRTLAGGPWSMVGWLGVTAGFVILSYYCVVAGWAVNYLWLAIKGTFGGGHIQQVPELFSSLLASDLSQLFWQALFMGAT
IWIVLGGVSDGLERASKLMMPVLFLILIVLTVRGLFSPGGPRALSFLFTPNWRMLDAAAMLEAMGHAFFTLSLGMGAMLT
YGSYANERTNIPNVAITVSIMDTCVALLSGIAIFSIVFTYGMAPAAGPGLVFKTLPILFSQMQGGTFVAILFFLLLVFAA
LTSSISLLEVVVAYYCDEKKWQRRTATLVMGFLIFLLGVPSALSNHLLADVHFIGGRNFLDSIDLVATNYILPLGALFIA
IFTGWVMTTRVARGEIEKGTVNFHFYPLWHFLIKYVSPIMVAILFLSKIGLI
>Mature_451_residues
ARYHGTPKRGHWSSRLGFIMASAGSAVGLGNIWKFPYITGMHGGGAFVLFFLICIALIGIPLMIAEMVIGRHTHKDPVGA
FRTLAGGPWSMVGWLGVTAGFVILSYYCVVAGWAVNYLWLAIKGTFGGGHIQQVPELFSSLLASDLSQLFWQALFMGATI
WIVLGGVSDGLERASKLMMPVLFLILIVLTVRGLFSPGGPRALSFLFTPNWRMLDAAAMLEAMGHAFFTLSLGMGAMLTY
GSYANERTNIPNVAITVSIMDTCVALLSGIAIFSIVFTYGMAPAAGPGLVFKTLPILFSQMQGGTFVAILFFLLLVFAAL
TSSISLLEVVVAYYCDEKKWQRRTATLVMGFLIFLLGVPSALSNHLLADVHFIGGRNFLDSIDLVATNYILPLGALFIAI
FTGWVMTTRVARGEIEKGTVNFHFYPLWHFLIKYVSPIMVAILFLSKIGLI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=396, Percent_Identity=27.7777777777778, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI188528618, Length=381, Percent_Identity=26.246719160105, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI21361581, Length=495, Percent_Identity=24.040404040404, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI194018524, Length=299, Percent_Identity=29.0969899665552, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI171184408, Length=405, Percent_Identity=23.7037037037037, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI171184406, Length=405, Percent_Identity=23.7037037037037, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI171184404, Length=405, Percent_Identity=23.7037037037037, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI7657587, Length=474, Percent_Identity=23.8396624472574, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI11181770, Length=299, Percent_Identity=27.4247491638796, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI289191377, Length=484, Percent_Identity=23.9669421487603, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI289191351, Length=484, Percent_Identity=23.9669421487603, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI4557046, Length=484, Percent_Identity=23.9669421487603, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=27.0627062706271, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI51468073, Length=296, Percent_Identity=26.0135135135135, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI197276623, Length=350, Percent_Identity=25.4285714285714, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI54607094, Length=350, Percent_Identity=25.4285714285714, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI33354281, Length=303, Percent_Identity=24.0924092409241, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI134304856, Length=399, Percent_Identity=25.8145363408521, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI6005715, Length=438, Percent_Identity=23.972602739726, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=26.9090909090909, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI67782317, Length=416, Percent_Identity=25.7211538461538, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI67782313, Length=416, Percent_Identity=26.6826923076923, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI67782315, Length=416, Percent_Identity=26.6826923076923, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4507041, Length=403, Percent_Identity=23.0769230769231, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=35.3982300884956, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI5032097, Length=343, Percent_Identity=23.6151603498542, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI92859670, Length=76, Percent_Identity=43.421052631579, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI197276625, Length=128, Percent_Identity=32.03125, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI289191353, Length=267, Percent_Identity=26.5917602996255, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI218563756, Length=343, Percent_Identity=23.3236151603499, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI300360519, Length=279, Percent_Identity=24.0143369175627, Blast_Score=70, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI25146584, Length=420, Percent_Identity=25.952380952381, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17555248, Length=414, Percent_Identity=24.8792270531401, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI133952791, Length=451, Percent_Identity=24.8337028824834, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17554804, Length=373, Percent_Identity=28.4182305630027, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17569475, Length=414, Percent_Identity=24.6376811594203, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115534083, Length=433, Percent_Identity=24.2494226327945, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17542050, Length=116, Percent_Identity=33.6206896551724, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71995588, Length=191, Percent_Identity=26.7015706806283, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71998244, Length=349, Percent_Identity=24.6418338108883, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17535731, Length=124, Percent_Identity=35.4838709677419, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI212642127, Length=100, Percent_Identity=34, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654186, Length=532, Percent_Identity=24.6240601503759, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI17136952, Length=385, Percent_Identity=25.4545454545455, Blast_Score=134, Evalue=2e-31,
Organism=Drosophila melanogaster, GI281364394, Length=384, Percent_Identity=25.78125, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI28574704, Length=384, Percent_Identity=25.78125, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI17136950, Length=384, Percent_Identity=25.78125, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI28574702, Length=384, Percent_Identity=25.78125, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24762620, Length=399, Percent_Identity=28.0701754385965, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24639514, Length=507, Percent_Identity=25.2465483234714, Blast_Score=131, Evalue=8e-31,
Organism=Drosophila melanogaster, GI221329674, Length=507, Percent_Identity=25.4437869822485, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24639516, Length=527, Percent_Identity=24.6679316888046, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI45551183, Length=406, Percent_Identity=24.6305418719212, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI45550877, Length=405, Percent_Identity=24.4444444444444, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24661428, Length=469, Percent_Identity=24.9466950959488, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI19921936, Length=466, Percent_Identity=23.175965665236, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI281363702, Length=397, Percent_Identity=25.4408060453401, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24652942, Length=467, Percent_Identity=23.1263383297645, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24582567, Length=404, Percent_Identity=24.7524752475248, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI45551088, Length=467, Percent_Identity=23.1263383297645, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24639853, Length=520, Percent_Identity=24.4230769230769, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24655079, Length=308, Percent_Identity=26.9480519480519, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI281363700, Length=306, Percent_Identity=27.1241830065359, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI281365034, Length=431, Percent_Identity=24.8259860788863, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI19921352, Length=440, Percent_Identity=24.5454545454545, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24584353, Length=440, Percent_Identity=24.5454545454545, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI281364136, Length=116, Percent_Identity=33.6206896551724, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24582569, Length=359, Percent_Identity=22.8412256267409, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49184; Mature: 49053

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYHGTPKRGHWSSRLGFIMASAGSAVGLGNIWKFPYITGMHGGGAFVLFFLICIALIG
CCCCCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
IPLMIAEMVIGRHTHKDPVGAFRTLAGGPWSMVGWLGVTAGFVILSYYCVVAGWAVNYLW
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LAIKGTFGGGHIQQVPELFSSLLASDLSQLFWQALFMGATIWIVLGGVSDGLERASKLMM
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHH
PVLFLILIVLTVRGLFSPGGPRALSFLFTPNWRMLDAAAMLEAMGHAFFTLSLGMGAMLT
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YGSYANERTNIPNVAITVSIMDTCVALLSGIAIFSIVFTYGMAPAAGPGLVFKTLPILFS
HCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QMQGGTFVAILFFLLLVFAALTSSISLLEVVVAYYCDEKKWQRRTATLVMGFLIFLLGVP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
SALSNHLLADVHFIGGRNFLDSIDLVATNYILPLGALFIAIFTGWVMTTRVARGEIEKGT
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VNFHFYPLWHFLIKYVSPIMVAILFLSKIGLI
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARYHGTPKRGHWSSRLGFIMASAGSAVGLGNIWKFPYITGMHGGGAFVLFFLICIALIG
CCCCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
IPLMIAEMVIGRHTHKDPVGAFRTLAGGPWSMVGWLGVTAGFVILSYYCVVAGWAVNYLW
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LAIKGTFGGGHIQQVPELFSSLLASDLSQLFWQALFMGATIWIVLGGVSDGLERASKLMM
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHH
PVLFLILIVLTVRGLFSPGGPRALSFLFTPNWRMLDAAAMLEAMGHAFFTLSLGMGAMLT
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YGSYANERTNIPNVAITVSIMDTCVALLSGIAIFSIVFTYGMAPAAGPGLVFKTLPILFS
HCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QMQGGTFVAILFFLLLVFAALTSSISLLEVVVAYYCDEKKWQRRTATLVMGFLIFLLGVP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
SALSNHLLADVHFIGGRNFLDSIDLVATNYILPLGALFIAIFTGWVMTTRVARGEIEKGT
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VNFHFYPLWHFLIKYVSPIMVAILFLSKIGLI
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]