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The map label for this gene is ihfB [H]

Identifier: 118579779

GI number: 118579779

Start: 1433597

End: 1433875

Strand: Direct

Name: ihfB [H]

Synonym: Ppro_1351

Alternate gene names: 118579779

Gene position: 1433597-1433875 (Clockwise)

Preceding gene: 118579778

Following gene: 118579785

Centisome position: 35.77

GC content: 49.46

Gene sequence:

>279_bases
ATGACCAAGAGCGAACTGATTGAAAAAGTCGTGCAGGAGCACGCTGTTTTAAATATGAAAGTTTCGGAAATGCTGGTCAA
TACGGTCTTTGATTCAATCGAAGATGCGCTCAGGGCTGGTGACAAGGTTGAGATTCGCGGGTTTGGCAGTTTTACCATCA
GAGAACGCACGGGGCGTGAGGCACGCAACCCCAAGAGTGGCGAGGTGGTCAGCATACCGGCCAAAAAAACCCCTTTTTTC
AAGACCGGCAAGGATCTCAAGGAGAGAGTCAACTGTTGA

Upstream 100 bases:

>100_bases
GTTCTCAAGGCAAGGCGACCTCCAACCTGGGCGAACTGCTGCAGCAGGAAATGAAGAACAGAAACAACAATTAAGGTATG
TACGGTAGGAGAGATGCAAA

Downstream 100 bases:

>100_bases
TGAACATCGGGCTCTTGTCCGACGGTTGCCATGACCTGCCCGGATGGCGGAATTGGTAGACGCAAGGGACTTAAAATCCC
TCGGTCGAAAGATCGTGCCG

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGREARNPKSGEVVSIPAKKTPFF
KTGKDLKERVNC

Sequences:

>Translated_92_residues
MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGREARNPKSGEVVSIPAKKTPFF
KTGKDLKERVNC
>Mature_91_residues
TKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGREARNPKSGEVVSIPAKKTPFFK
TGKDLKERVNC

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=92, Percent_Identity=41.304347826087, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=37.3626373626374, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=36.6666666666667, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10340; Mature: 10209

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCC
ARNPKSGEVVSIPAKKTPFFKTGKDLKERVNC
CCCCCCCCEEECCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
TKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCC
ARNPKSGEVVSIPAKKTPFFKTGKDLKERVNC
CCCCCCCCEEECCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA