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The map label for this gene is citF [H]

Identifier: 118579517

GI number: 118579517

Start: 1134331

End: 1135869

Strand: Reverse

Name: citF [H]

Synonym: Ppro_1084

Alternate gene names: 118579517

Gene position: 1135869-1134331 (Counterclockwise)

Preceding gene: 118579518

Following gene: 118579516

Centisome position: 28.34

GC content: 65.3

Gene sequence:

>1539_bases
ATGGCGCTGAATAGCCTGGGGCGCACCATCCCCGACAGCTTTGCCGGCAGTAAGCTGATCCCCTACCAGGATCCCTGGTC
GCTCATGCCCCACACCCTGCGGGCCACCCGGCCGACCAAGCGCATCCCCCATAACGACAGGAAGGTGCTCTCCGGCATCC
GGGAGGCGATCATCGCCTCGGGACTTAAGGACGGCATGACCATCTCCACCCACCACAGCCTGCGCAACGGCGACTACGTC
CTCAACCAGGTGATCAGGGAGATCGACGCACTGGGTATCCGTGACATCAGGATCGCCTCCAGCTCCATCCATCCGGTGCA
TGCCGAGATCATCCCCGCCATCCGCAAGGGGGTGATCACCTCCCTGGAGTGCGGGGTCAACGGCCTGATCGGCGAGCTGA
TCTCCAAGGGCGAGCTCAGCTGTCCGGTCATTGTCCGCTCCCACGGCGGGCGGGCTCGCGCCCTGATCACCGGGGAGGTA
GGGGTGGACGTGGCTTTCCTGGCCGCCCCCTGCTGCGACGACTACGGCAACTTCAATGGCTTCTCCGGCCCCTCGGCCTG
CGGCAGTCTGGGGTACGCCATGGTGGATGCCCAGCACGCCCGCACGGTGGTGGCGCTGACCGACAACCTAGTTCCCTACC
CAGCCGTACCGGTGGGCATCTCCCAGAGCGTGGTGGACTATGTGGTTGCGGTGGAATCCATCGGCGACCCGGCCAAGATC
GTCTCCACCACCACCCGTATCACCACCGACCCCATCGGCCTGCAGATAGCCAAGCACGCAGCGCAAGTAATCGAGTCCTC
CGGCCTGCTGAAAGACGGCTTCTCCTTCCAGACCGGCACCGGCGGCATATCCCTGGCCGTTGCCGAACAGGTGCGGGGCC
TGATGCGCCGGGGGAACATCAGGGGCAGTTTCGGCTGCGGCGGCATCACCGGGCACTTCGTGGACATGCTGGAGGAGGGG
CTGTTCCAGGCGCTGTTCGACGTGCAGTGCTTCGACCTGAAAGCGGTGGAATCCATCGCCAGGAACCGCAACCACCAGGA
GATCAGCGCCACCATGTACGCCAATCCCTTCAACAGCGGGGCGGTGGTCAACCGTCTGGACTGCGTGATCCTGAGCGCCA
CCGAGGTGGACGTGGACTTCAATGTCAACGTCAACACCGAATCCAACGGCTATCTGCTGCACAACACCGGCGGCCACAGC
GACACCGCCGCCGGGGCCAAGCTCTCCATCATTGTCGCCCCCTCCATCCGGGGGCGCCTGCCCATCATCAGGGACGAGGT
CACCACCATCACCACGCCGGGGGAGACGGTGGACGTGGTGGTCACCGAGCGGGGTATCGCCGTCAATCCCCGCCACCCGG
AGCTGAAGGCAGAACTGCTCCGGCGCCGGGCGCCGGTCAAGGAGATCCGCGAGCTGCGCGACGAGATCTACGAGCTGACC
GGCGTACCGCGGCCGCTGGAGTTCGAGGACGATGTGGTCGGGCTGGTGGAGTACCGCGACGGGTCGATCATCGATGTCAT
CCGCAGAGTCAAGGAGTAG

Upstream 100 bases:

>100_bases
AAGATGATCGACGCGCCGGTGGTCAAGCGCGCGGCGCGGGTGCTGCGCACCGCCTTTGCCCACGGCCTGGTGGACGAGAT
CATTCACGAGGAGGATATCC

Downstream 100 bases:

>100_bases
CATCCTGGCGGCCCGGGAGGCCAGACAGGAGCTCTTGGACCGCCATAGCGGCACATTCCCCGCTTTCATATTCCTCTCCC
TCAACATCCCCGGTGAGTGC

Product: citrate lyase subunit alpha

Products: NA

Alternate protein names: Citrase alpha chain; Citrate (pro-3S)-lyase alpha chain; Citrate CoA-transferase subunit [H]

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MALNSLGRTIPDSFAGSKLIPYQDPWSLMPHTLRATRPTKRIPHNDRKVLSGIREAIIASGLKDGMTISTHHSLRNGDYV
LNQVIREIDALGIRDIRIASSSIHPVHAEIIPAIRKGVITSLECGVNGLIGELISKGELSCPVIVRSHGGRARALITGEV
GVDVAFLAAPCCDDYGNFNGFSGPSACGSLGYAMVDAQHARTVVALTDNLVPYPAVPVGISQSVVDYVVAVESIGDPAKI
VSTTTRITTDPIGLQIAKHAAQVIESSGLLKDGFSFQTGTGGISLAVAEQVRGLMRRGNIRGSFGCGGITGHFVDMLEEG
LFQALFDVQCFDLKAVESIARNRNHQEISATMYANPFNSGAVVNRLDCVILSATEVDVDFNVNVNTESNGYLLHNTGGHS
DTAAGAKLSIIVAPSIRGRLPIIRDEVTTITTPGETVDVVVTERGIAVNPRHPELKAELLRRRAPVKEIRELRDEIYELT
GVPRPLEFEDDVVGLVEYRDGSIIDVIRRVKE

Sequences:

>Translated_512_residues
MALNSLGRTIPDSFAGSKLIPYQDPWSLMPHTLRATRPTKRIPHNDRKVLSGIREAIIASGLKDGMTISTHHSLRNGDYV
LNQVIREIDALGIRDIRIASSSIHPVHAEIIPAIRKGVITSLECGVNGLIGELISKGELSCPVIVRSHGGRARALITGEV
GVDVAFLAAPCCDDYGNFNGFSGPSACGSLGYAMVDAQHARTVVALTDNLVPYPAVPVGISQSVVDYVVAVESIGDPAKI
VSTTTRITTDPIGLQIAKHAAQVIESSGLLKDGFSFQTGTGGISLAVAEQVRGLMRRGNIRGSFGCGGITGHFVDMLEEG
LFQALFDVQCFDLKAVESIARNRNHQEISATMYANPFNSGAVVNRLDCVILSATEVDVDFNVNVNTESNGYLLHNTGGHS
DTAAGAKLSIIVAPSIRGRLPIIRDEVTTITTPGETVDVVVTERGIAVNPRHPELKAELLRRRAPVKEIRELRDEIYELT
GVPRPLEFEDDVVGLVEYRDGSIIDVIRRVKE
>Mature_511_residues
ALNSLGRTIPDSFAGSKLIPYQDPWSLMPHTLRATRPTKRIPHNDRKVLSGIREAIIASGLKDGMTISTHHSLRNGDYVL
NQVIREIDALGIRDIRIASSSIHPVHAEIIPAIRKGVITSLECGVNGLIGELISKGELSCPVIVRSHGGRARALITGEVG
VDVAFLAAPCCDDYGNFNGFSGPSACGSLGYAMVDAQHARTVVALTDNLVPYPAVPVGISQSVVDYVVAVESIGDPAKIV
STTTRITTDPIGLQIAKHAAQVIESSGLLKDGFSFQTGTGGISLAVAEQVRGLMRRGNIRGSFGCGGITGHFVDMLEEGL
FQALFDVQCFDLKAVESIARNRNHQEISATMYANPFNSGAVVNRLDCVILSATEVDVDFNVNVNTESNGYLLHNTGGHSD
TAAGAKLSIIVAPSIRGRLPIIRDEVTTITTPGETVDVVVTERGIAVNPRHPELKAELLRRRAPVKEIRELRDEIYELTG
VPRPLEFEDDVVGLVEYRDGSIIDVIRRVKE

Specific function: Represents a citrate:acetyl-ACP transferase [H]

COG id: COG3051

COG function: function code C; Citrate lyase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786832, Length=468, Percent_Identity=51.2820512820513, Blast_Score=462, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006472 [H]

Pfam domain/function: PF04223 CitF [H]

EC number: =4.1.3.6; =2.8.3.10 [H]

Molecular weight: Translated: 55073; Mature: 54941

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNSLGRTIPDSFAGSKLIPYQDPWSLMPHTLRATRPTKRIPHNDRKVLSGIREAIIAS
CCCCHHCCCCCHHHCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GLKDGMTISTHHSLRNGDYVLNQVIREIDALGIRDIRIASSSIHPVHAEIIPAIRKGVIT
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
SLECGVNGLIGELISKGELSCPVIVRSHGGRARALITGEVGVDVAFLAAPCCDDYGNFNG
HHHCCCHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHCCCHHHCCCCCCC
FSGPSACGSLGYAMVDAQHARTVVALTDNLVPYPAVPVGISQSVVDYVVAVESIGDPAKI
CCCCHHHHHCCHHEEEHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
VSTTTRITTDPIGLQIAKHAAQVIESSGLLKDGFSFQTGTGGISLAVAEQVRGLMRRGNI
HEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEHHHHHHHHHHHHHCCC
RGSFGCGGITGHFVDMLEEGLFQALFDVQCFDLKAVESIARNRNHQEISATMYANPFNSG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
AVVNRLDCVILSATEVDVDFNVNVNTESNGYLLHNTGGHSDTAAGAKLSIIVAPSIRGRL
CCEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCC
PIIRDEVTTITTPGETVDVVVTERGIAVNPRHPELKAELLRRRAPVKEIRELRDEIYELT
CEEECCCEEEECCCCEEEEEEECCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
GVPRPLEFEDDVVGLVEYRDGSIIDVIRRVKE
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure 
ALNSLGRTIPDSFAGSKLIPYQDPWSLMPHTLRATRPTKRIPHNDRKVLSGIREAIIAS
CCCHHCCCCCHHHCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GLKDGMTISTHHSLRNGDYVLNQVIREIDALGIRDIRIASSSIHPVHAEIIPAIRKGVIT
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
SLECGVNGLIGELISKGELSCPVIVRSHGGRARALITGEVGVDVAFLAAPCCDDYGNFNG
HHHCCCHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHCCCHHHCCCCCCC
FSGPSACGSLGYAMVDAQHARTVVALTDNLVPYPAVPVGISQSVVDYVVAVESIGDPAKI
CCCCHHHHHCCHHEEEHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
VSTTTRITTDPIGLQIAKHAAQVIESSGLLKDGFSFQTGTGGISLAVAEQVRGLMRRGNI
HEECCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEHHHHHHHHHHHHHCCC
RGSFGCGGITGHFVDMLEEGLFQALFDVQCFDLKAVESIARNRNHQEISATMYANPFNSG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
AVVNRLDCVILSATEVDVDFNVNVNTESNGYLLHNTGGHSDTAAGAKLSIIVAPSIRGRL
CCEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCC
PIIRDEVTTITTPGETVDVVVTERGIAVNPRHPELKAELLRRRAPVKEIRELRDEIYELT
CEEECCCEEEECCCCEEEEEEECCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
GVPRPLEFEDDVVGLVEYRDGSIIDVIRRVKE
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7830578; 773936 [H]