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The map label for this gene is rbfA

Identifier: 118579400

GI number: 118579400

Start: 1007924

End: 1008292

Strand: Direct

Name: rbfA

Synonym: Ppro_0964

Alternate gene names: 118579400

Gene position: 1007924-1008292 (Clockwise)

Preceding gene: 118579399

Following gene: 118579401

Centisome position: 25.15

GC content: 54.47

Gene sequence:

>369_bases
ATGAGCAAACGTTCCGAAAAACTGGCTGAAACCATTCACGAGACCATCTCCTCGATCCTCTCCAGGGGGCTTAACGACCC
CCGCATCGGCTTCGTCACCCTCACCGCGGTCGACGTGGTCGAGGACTTGAGTATTGCCCGCATTTACTTTACGGCGATCG
GCGACCGGGACGCCAGGAAGAACAGTGAGGCCGGATTAAACAGTGCCAAGGGGTACCTGCGTCGTGAACTGGGTAAGGTG
CTGACTATCCGGCATATACCGGAGCTGATCTTCAAGTACGATGAATCCCAGGAGTACGGTAACCGGATTGATTCCATCCT
CAGGGAGATCGCTACTGAGCATGACCGAGACGATTCAGAACATAGTTGA

Upstream 100 bases:

>100_bases
TCATCGAGGCCTTCGAGATCGAGAAGGTCGCCACCAAGCTTTAACAGCGGTTCGAGGTTCGGGAGATTGATCCCGAACCT
CGAACCTTGAACAGGATTCC

Downstream 100 bases:

>100_bases
CGAGATCCGTGCCAACGGCTCGTTTCTCCTGACCACCCACGAGAGCCCGGATGGCGATGCGGTCGGCTCTTCCCTTGCCC
TGGCCTCCTTCCTGCGCCGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSKRSEKLAETIHETISSILSRGLNDPRIGFVTLTAVDVVEDLSIARIYFTAIGDRDARKNSEAGLNSAKGYLRRELGKV
LTIRHIPELIFKYDESQEYGNRIDSILREIATEHDRDDSEHS

Sequences:

>Translated_122_residues
MSKRSEKLAETIHETISSILSRGLNDPRIGFVTLTAVDVVEDLSIARIYFTAIGDRDARKNSEAGLNSAKGYLRRELGKV
LTIRHIPELIFKYDESQEYGNRIDSILREIATEHDRDDSEHS
>Mature_121_residues
SKRSEKLAETIHETISSILSRGLNDPRIGFVTLTAVDVVEDLSIARIYFTAIGDRDARKNSEAGLNSAKGYLRRELGKVL
TIRHIPELIFKYDESQEYGNRIDSILREIATEHDRDDSEHS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=115, Percent_Identity=34.7826086956522, Blast_Score=75, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PELPD (A1AMM2)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900650.1
- ProteinModelPortal:   A1AMM2
- STRING:   A1AMM2
- GeneID:   4574249
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_0964
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   A1AMM2
- ProtClustDB:   PRK13815
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13847; Mature: 13715

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRSEKLAETIHETISSILSRGLNDPRIGFVTLTAVDVVEDLSIARIYFTAIGDRDARK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NSEAGLNSAKGYLRRELGKVLTIRHIPELIFKYDESQEYGNRIDSILREIATEHDRDDSE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
HS
CC
>Mature Secondary Structure 
SKRSEKLAETIHETISSILSRGLNDPRIGFVTLTAVDVVEDLSIARIYFTAIGDRDARK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NSEAGLNSAKGYLRRELGKVLTIRHIPELIFKYDESQEYGNRIDSILREIATEHDRDDSE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
HS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA