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The map label for this gene is atpD [H]

Identifier: 118579288

GI number: 118579288

Start: 896095

End: 897495

Strand: Reverse

Name: atpD [H]

Synonym: Ppro_0851

Alternate gene names: 118579288

Gene position: 897495-896095 (Counterclockwise)

Preceding gene: 118579291

Following gene: 118579287

Centisome position: 22.39

GC content: 67.09

Gene sequence:

>1401_bases
ATGGAACAGCTGCCCGCAAACCACATAGTCGATACCGAACCGATCGGCACCGTTGTCGAGGTGCACGGTCCGGTGGTGCT
GATCCACTGCGACCGCCTCCCCCCGCTGAGGCAGGCCCTGATAGCCCACAACGGCGAACGGAGCTACACCTTCGAGGTCT
ACCAGCACCTGGACCGGGAAAACATCCGCGCCATCACCCTGGAAGAACCGGCCGGCCTGCGGCGCGGCATGAGGGTGCAT
GACCGGGGCGCGCCGCTCTCGATTCCGGTGTCACCCCAGTGCCTGGGACGGCTGCTGGACGCCTTCGGCGCCCCGCTGGA
CGACGGCCCGCCCCTGTCCGGTAATGAACGACGCCCGATCCATGCCCACCCCGCCCCTTTCCACGAGACAACCGCCGCCA
GCGGCATCCTGGAGACCGGCATCAAGGTGATCGACCTGCTCAGTCCCTTCGTGCGCGGCGGCAAGACCGGGCTCTTCGGC
GGCGCTGGGGTGGGCAAAACCGTCCTGATCATGGAGTTCATGCACGCCATCGTGGCCCTGCACCGGGGGGTGTCGGTCTT
CGCCGGCGTGGGGGAGCGGATCCGTGAGGGGCACGAACTGTGGCACGAGATGCGCGACGCCGGGGTTATGCCCCACACCC
TGATCGTTCTGGGGCAGATGGACGAATCCCCCGGTATCCGCTTCCGGGTGGGGTTGGCGGCCCTGACCTACGCCGAATAC
CTGCGGGACAGCCTGGGCACGGAGGTACTCTTCCTGATGGACAACGTGTTCCGCTTTGCCCAGGCCGGCAGCGAGATATC
CGGGCTCCTGGGGCGCATCCCGGCCACCGTCGGCTACCAGCCGACCCTGATGAGCGAGGTGGCCGAACTGGAAGACCGCA
TCATCTCCACCCGGTCGGGGGCACTGACCTCGGTGCAGGCGGTGTACGTGCCGGCCGACGACATGAGCGATCCAGCGGTG
AACGCAATCCTGGGGCATCTGGACTCCATGGTGATCCTCTCCCGCTCCCAGGCCAGCAAGGGGATCTATCCGGCCGTGGA
CCCGCTGCAATCCACCACCAGCCTGATGGACCGCCGCGTCCTGGGGGACCGTCACTACGCGGCGGCCGAGGGGGTGCGCG
AGCATCTGGCGCGCTACCGGGAACTGGAGGACATGATCGCCATGCTCGGCATCCAGGAACTCTCCGAGCACGACCGTCGC
ATGGTGCTGCGGGCGCGCAAGCTCCAGCGCTACCTGACCCAGCCGTTCCACGTCACCGCCGAGCATGCCGGCATGAAGGG
GGTCTCCGTCCCCCTGGAAGAGACGCTTTCCGACTGCGAGCGTTTCCTAAAGGGCGAGTACGACGAGCTGAGCGAGGATG
AATGCTACATGCGGGGCGCCATGGGGAGGCCTCGGCCATGA

Upstream 100 bases:

>100_bases
CCTCCTTGCCATCCCCACTGTTGGCGATACACTCCCCTTACGGGAACAACCATCAGAACCTTTTCGCATGCCCCCATCAT
TCCCGCCCTGGGCCTATCCC

Downstream 100 bases:

>100_bases
AAACAATGACCCTGCATCTGCGCCATTCATCTGGCCACGACCGTTTCGAGAACCTTTCCAGCTTCGTGGGTGAAGACGCC
AGCGGCAGCTTCGGCATCCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MEQLPANHIVDTEPIGTVVEVHGPVVLIHCDRLPPLRQALIAHNGERSYTFEVYQHLDRENIRAITLEEPAGLRRGMRVH
DRGAPLSIPVSPQCLGRLLDAFGAPLDDGPPLSGNERRPIHAHPAPFHETTAASGILETGIKVIDLLSPFVRGGKTGLFG
GAGVGKTVLIMEFMHAIVALHRGVSVFAGVGERIREGHELWHEMRDAGVMPHTLIVLGQMDESPGIRFRVGLAALTYAEY
LRDSLGTEVLFLMDNVFRFAQAGSEISGLLGRIPATVGYQPTLMSEVAELEDRIISTRSGALTSVQAVYVPADDMSDPAV
NAILGHLDSMVILSRSQASKGIYPAVDPLQSTTSLMDRRVLGDRHYAAAEGVREHLARYRELEDMIAMLGIQELSEHDRR
MVLRARKLQRYLTQPFHVTAEHAGMKGVSVPLEETLSDCERFLKGEYDELSEDECYMRGAMGRPRP

Sequences:

>Translated_466_residues
MEQLPANHIVDTEPIGTVVEVHGPVVLIHCDRLPPLRQALIAHNGERSYTFEVYQHLDRENIRAITLEEPAGLRRGMRVH
DRGAPLSIPVSPQCLGRLLDAFGAPLDDGPPLSGNERRPIHAHPAPFHETTAASGILETGIKVIDLLSPFVRGGKTGLFG
GAGVGKTVLIMEFMHAIVALHRGVSVFAGVGERIREGHELWHEMRDAGVMPHTLIVLGQMDESPGIRFRVGLAALTYAEY
LRDSLGTEVLFLMDNVFRFAQAGSEISGLLGRIPATVGYQPTLMSEVAELEDRIISTRSGALTSVQAVYVPADDMSDPAV
NAILGHLDSMVILSRSQASKGIYPAVDPLQSTTSLMDRRVLGDRHYAAAEGVREHLARYRELEDMIAMLGIQELSEHDRR
MVLRARKLQRYLTQPFHVTAEHAGMKGVSVPLEETLSDCERFLKGEYDELSEDECYMRGAMGRPRP
>Mature_466_residues
MEQLPANHIVDTEPIGTVVEVHGPVVLIHCDRLPPLRQALIAHNGERSYTFEVYQHLDRENIRAITLEEPAGLRRGMRVH
DRGAPLSIPVSPQCLGRLLDAFGAPLDDGPPLSGNERRPIHAHPAPFHETTAASGILETGIKVIDLLSPFVRGGKTGLFG
GAGVGKTVLIMEFMHAIVALHRGVSVFAGVGERIREGHELWHEMRDAGVMPHTLIVLGQMDESPGIRFRVGLAALTYAEY
LRDSLGTEVLFLMDNVFRFAQAGSEISGLLGRIPATVGYQPTLMSEVAELEDRIISTRSGALTSVQAVYVPADDMSDPAV
NAILGHLDSMVILSRSQASKGIYPAVDPLQSTTSLMDRRVLGDRHYAAAEGVREHLARYRELEDMIAMLGIQELSEHDRR
MVLRARKLQRYLTQPFHVTAEHAGMKGVSVPLEETLSDCERFLKGEYDELSEDECYMRGAMGRPRP

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=451, Percent_Identity=50.3325942350333, Blast_Score=456, Evalue=1e-128,
Organism=Homo sapiens, GI19913426, Length=416, Percent_Identity=23.5576923076923, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI19913424, Length=309, Percent_Identity=29.4498381877023, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI50345984, Length=455, Percent_Identity=22.4175824175824, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4757810, Length=455, Percent_Identity=22.4175824175824, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI19913428, Length=421, Percent_Identity=22.8028503562945, Blast_Score=93, Evalue=6e-19,
Organism=Escherichia coli, GI1790170, Length=448, Percent_Identity=48.4375, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1788251, Length=402, Percent_Identity=28.8557213930348, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1790172, Length=435, Percent_Identity=24.8275862068966, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=453, Percent_Identity=49.2273730684327, Blast_Score=434, Evalue=1e-122,
Organism=Caenorhabditis elegans, GI17510931, Length=404, Percent_Identity=23.5148514851485, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=29.1390728476821, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=421, Percent_Identity=22.3277909738717, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=394, Percent_Identity=23.0964467005076, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=394, Percent_Identity=23.0964467005076, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=348, Percent_Identity=21.8390804597701, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=453, Percent_Identity=48.5651214128035, Blast_Score=442, Evalue=1e-125,
Organism=Saccharomyces cerevisiae, GI6319603, Length=422, Percent_Identity=24.6445497630332, Blast_Score=102, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6319370, Length=360, Percent_Identity=23.8888888888889, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24638766, Length=451, Percent_Identity=49.0022172949002, Blast_Score=441, Evalue=1e-124,
Organism=Drosophila melanogaster, GI28574560, Length=452, Percent_Identity=47.5663716814159, Blast_Score=414, Evalue=1e-116,
Organism=Drosophila melanogaster, GI24583992, Length=404, Percent_Identity=26.4851485148515, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583988, Length=318, Percent_Identity=28.3018867924528, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24583986, Length=318, Percent_Identity=28.3018867924528, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24583984, Length=318, Percent_Identity=28.3018867924528, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI20129479, Length=316, Percent_Identity=27.8481012658228, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281361666, Length=405, Percent_Identity=22.962962962963, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24646341, Length=405, Percent_Identity=22.962962962963, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17136796, Length=405, Percent_Identity=22.962962962963, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24658560, Length=374, Percent_Identity=22.192513368984, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51315; Mature: 51315

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLPANHIVDTEPIGTVVEVHGPVVLIHCDRLPPLRQALIAHNGERSYTFEVYQHLDRE
CCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHCCCC
NIRAITLEEPAGLRRGMRVHDRGAPLSIPVSPQCLGRLLDAFGAPLDDGPPLSGNERRPI
CCEEEEECCCHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HAHPAPFHETTAASGILETGIKVIDLLSPFVRGGKTGLFGGAGVGKTVLIMEFMHAIVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
HRGVSVFAGVGERIREGHELWHEMRDAGVMPHTLIVLGQMDESPGIRFRVGLAALTYAEY
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHH
LRDSLGTEVLFLMDNVFRFAQAGSEISGLLGRIPATVGYQPTLMSEVAELEDRIISTRSG
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
ALTSVQAVYVPADDMSDPAVNAILGHLDSMVILSRSQASKGIYPAVDPLQSTTSLMDRRV
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
LGDRHYAAAEGVREHLARYRELEDMIAMLGIQELSEHDRRMVLRARKLQRYLTQPFHVTA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEH
EHAGMKGVSVPLEETLSDCERFLKGEYDELSEDECYMRGAMGRPRP
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MEQLPANHIVDTEPIGTVVEVHGPVVLIHCDRLPPLRQALIAHNGERSYTFEVYQHLDRE
CCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHCCCC
NIRAITLEEPAGLRRGMRVHDRGAPLSIPVSPQCLGRLLDAFGAPLDDGPPLSGNERRPI
CCEEEEECCCHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HAHPAPFHETTAASGILETGIKVIDLLSPFVRGGKTGLFGGAGVGKTVLIMEFMHAIVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
HRGVSVFAGVGERIREGHELWHEMRDAGVMPHTLIVLGQMDESPGIRFRVGLAALTYAEY
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHH
LRDSLGTEVLFLMDNVFRFAQAGSEISGLLGRIPATVGYQPTLMSEVAELEDRIISTRSG
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
ALTSVQAVYVPADDMSDPAVNAILGHLDSMVILSRSQASKGIYPAVDPLQSTTSLMDRRV
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
LGDRHYAAAEGVREHLARYRELEDMIAMLGIQELSEHDRRMVLRARKLQRYLTQPFHVTA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEH
EHAGMKGVSVPLEETLSDCERFLKGEYDELSEDECYMRGAMGRPRP
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA