| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is hemY [H]
Identifier: 118578463
GI number: 118578463
Start: 16744
End: 18153
Strand: Direct
Name: hemY [H]
Synonym: Ppro_0014
Alternate gene names: 118578463
Gene position: 16744-18153 (Clockwise)
Preceding gene: 118578461
Following gene: 118578464
Centisome position: 0.42
GC content: 64.61
Gene sequence:
>1410_bases ATGAAGAGAGCGATCATCGTCGGTGGCGGCATATCCGGCCTGGCAACGGCCTGGCTGCTGCGGGAGAAAGCGCTGGCGTG CGGCATACAACTGGAGCTTGTGCTGCTGGAAAAGGATCAGCGGCCAGGGGGGAAGATCCGCAGCATCCACGAGGGTGGAT ACGTCTGCGAGTGGGGCCCCAACGGCTTTCTGGACAGCAAGCCCCAGACCCTGGAACTGTGCGACGCCGTAGGCGTCAGC AGCGATCTGCTGCGCAGCAACGACAATGCCCGCAAGCGCTTCATCTATTCCGACGGAGAGCTGCACCGCCTTCCCGAGGG TGGGGGTACGTTCCTCAAGAGCCGCCTTATTTCCTGGCCCGGCAAGCTGCGCCTGGCCCTGGAGCCGACCCCCTTCATTG CCCGTACCCCTGCGGGGGTTGACGAGTCCCTGGCTGATTTCGCCCGCCGCCGCCTGGGAGGGGAAGCCTTGGACAAACTG ATCTCACCCATGGTCTCGGGTATCTTTGCCGGCGACCCGGAGACCATGTCGCTGGTCTCCTGTTTCCCCCGCATCGCCCA GCTGGAGCGGGAGTACGGCGGCCTGATCAGGGCCATGGTCAGGCTGGCCAGACAGAAGAAGCGGGAACGGGCCGCCGGGA AGGCGGTCTCCTCTGCTGCCGGACCGGGAGGGGTGCTGACCTCCTTCCGTCCGGGTATCCAGTATCTCACCGACAGTCTG GCGGCCTCCCTGGGGGGGATCGTCATGGCGGACCGGGAGGTGAGCTGGGTCAGGCGGGGGAAGAGCGCGGCCTGGAGAGT CGGTTGCCGTGACGGCGGCGAGTATGACGCCGATCTGGTGATCGTTGCCTCGCCGGCCCATGCGGCCAGCGCCATACTCC ATGACTGTGACGCAGGGATCGCTTCGATCTTGGAGAGCATCCCCTATGCCAGCATGACGGTGGTCTGCCTCGGCTATGAG CGGGAGCTGGTCAGCCACCCCCTGGACGGTTTCGGCTACCTGATCCCCAAAAAAGAGGGGCGCAGCATCCTGGGAACGCT CTGGGACTCCAGCATGTTCGAGAACCGGGCGCCGACGGGAAAGGTGCTCTTGCGCAGCATGGTGGGTGGGGCCTGTTTTC CCGACTATGTGCACATGGGTGACGACGAACTGCTTGGCCGGGTCAGGGGGGATATGAAAGATGTCATGGGTATCGTCGCG GAGCCCTCTTTCATCCGGATCTTTCGCCATCCCCAAGCCATCCCCCAGTACACCGTCGGTCACGGGGAGAGGCTTAAGCA CCTGGAGGAGCGGCTGGCTTGTCATCCCGGCCTGATCCTGACCGGCAACTCCTATCGCGGCATCGGCCTGAACGACTGCG TGGCTGCGGCCCAGAGGGCGTCGGATCAGGCCCTGGAACTGCTTCGCTGA
Upstream 100 bases:
>100_bases AACAATGTAAGTCGCCTTGTCCGGCATGTCAATACGGCTGCCCAACCTTGACAGCCACTTTTCGTCAACGTACTATCCAC GCCATGGAGGGAACCATCCC
Downstream 100 bases:
>100_bases GCATGGCGGGGAACGGGGAACGCCGGCATGATGCCATGCCAGCCATGGAGATTATTCATCAGGGGGTGACGATCAGCTTC CACTACTGCCGGTCGCGGCG
Product: protoporphyrinogen oxidase
Products: NA
Alternate protein names: PPO [H]
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MKRAIIVGGGISGLATAWLLREKALACGIQLELVLLEKDQRPGGKIRSIHEGGYVCEWGPNGFLDSKPQTLELCDAVGVS SDLLRSNDNARKRFIYSDGELHRLPEGGGTFLKSRLISWPGKLRLALEPTPFIARTPAGVDESLADFARRRLGGEALDKL ISPMVSGIFAGDPETMSLVSCFPRIAQLEREYGGLIRAMVRLARQKKRERAAGKAVSSAAGPGGVLTSFRPGIQYLTDSL AASLGGIVMADREVSWVRRGKSAAWRVGCRDGGEYDADLVIVASPAHAASAILHDCDAGIASILESIPYASMTVVCLGYE RELVSHPLDGFGYLIPKKEGRSILGTLWDSSMFENRAPTGKVLLRSMVGGACFPDYVHMGDDELLGRVRGDMKDVMGIVA EPSFIRIFRHPQAIPQYTVGHGERLKHLEERLACHPGLILTGNSYRGIGLNDCVAAAQRASDQALELLR
Sequences:
>Translated_469_residues MKRAIIVGGGISGLATAWLLREKALACGIQLELVLLEKDQRPGGKIRSIHEGGYVCEWGPNGFLDSKPQTLELCDAVGVS SDLLRSNDNARKRFIYSDGELHRLPEGGGTFLKSRLISWPGKLRLALEPTPFIARTPAGVDESLADFARRRLGGEALDKL ISPMVSGIFAGDPETMSLVSCFPRIAQLEREYGGLIRAMVRLARQKKRERAAGKAVSSAAGPGGVLTSFRPGIQYLTDSL AASLGGIVMADREVSWVRRGKSAAWRVGCRDGGEYDADLVIVASPAHAASAILHDCDAGIASILESIPYASMTVVCLGYE RELVSHPLDGFGYLIPKKEGRSILGTLWDSSMFENRAPTGKVLLRSMVGGACFPDYVHMGDDELLGRVRGDMKDVMGIVA EPSFIRIFRHPQAIPQYTVGHGERLKHLEERLACHPGLILTGNSYRGIGLNDCVAAAQRASDQALELLR >Mature_469_residues MKRAIIVGGGISGLATAWLLREKALACGIQLELVLLEKDQRPGGKIRSIHEGGYVCEWGPNGFLDSKPQTLELCDAVGVS SDLLRSNDNARKRFIYSDGELHRLPEGGGTFLKSRLISWPGKLRLALEPTPFIARTPAGVDESLADFARRRLGGEALDKL ISPMVSGIFAGDPETMSLVSCFPRIAQLEREYGGLIRAMVRLARQKKRERAAGKAVSSAAGPGGVLTSFRPGIQYLTDSL AASLGGIVMADREVSWVRRGKSAAWRVGCRDGGEYDADLVIVASPAHAASAILHDCDAGIASILESIPYASMTVVCLGYE RELVSHPLDGFGYLIPKKEGRSILGTLWDSSMFENRAPTGKVLLRSMVGGACFPDYVHMGDDELLGRVRGDMKDVMGIVA EPSFIRIFRHPQAIPQYTVGHGERLKHLEERLACHPGLILTGNSYRGIGLNDCVAAAQRASDQALELLR
Specific function: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. May have an essential extracellular function during development, possibly as a pheromone [H]
COG id: COG1232
COG function: function code H; Protoporphyrinogen oxidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the protoporphyrinogen oxidase family [H]
Homologues:
Organism=Homo sapiens, GI170650615, Length=486, Percent_Identity=30.2469135802469, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI4506001, Length=486, Percent_Identity=30.2469135802469, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI24649745, Length=458, Percent_Identity=27.292576419214, Blast_Score=141, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002937 - InterPro: IPR016040 - InterPro: IPR004572 [H]
Pfam domain/function: PF01593 Amino_oxidase [H]
EC number: =1.3.3.4 [H]
Molecular weight: Translated: 50732; Mature: 50732
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRAIIVGGGISGLATAWLLREKALACGIQLELVLLEKDQRPGGKIRSIHEGGYVCEWGP CCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEECCCEEEEECC NGFLDSKPQTLELCDAVGVSSDLLRSNDNARKRFIYSDGELHRLPEGGGTFLKSRLISWP CCCCCCCCCHHHHHHHCCCCHHHHHCCCCHHEEEEECCCCEEECCCCCHHHHHHHHHCCC GKLRLALEPTPFIARTPAGVDESLADFARRRLGGEALDKLISPMVSGIFAGDPETMSLVS CCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH CFPRIAQLEREYGGLIRAMVRLARQKKRERAAGKAVSSAAGPGGVLTSFRPGIQYLTDSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHH AASLGGIVMADREVSWVRRGKSAAWRVGCRDGGEYDADLVIVASPAHAASAILHDCDAGI HHHHCCEEEECCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH ASILESIPYASMTVVCLGYERELVSHPLDGFGYLIPKKEGRSILGTLWDSSMFENRAPTG HHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHH KVLLRSMVGGACFPDYVHMGDDELLGRVRGDMKDVMGIVAEPSFIRIFRHPQAIPQYTVG HHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEHHCCCCCCCCCCC HGERLKHLEERLACHPGLILTGNSYRGIGLNDCVAAAQRASDQALELLR CHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKRAIIVGGGISGLATAWLLREKALACGIQLELVLLEKDQRPGGKIRSIHEGGYVCEWGP CCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEECCCEEEEECC NGFLDSKPQTLELCDAVGVSSDLLRSNDNARKRFIYSDGELHRLPEGGGTFLKSRLISWP CCCCCCCCCHHHHHHHCCCCHHHHHCCCCHHEEEEECCCCEEECCCCCHHHHHHHHHCCC GKLRLALEPTPFIARTPAGVDESLADFARRRLGGEALDKLISPMVSGIFAGDPETMSLVS CCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH CFPRIAQLEREYGGLIRAMVRLARQKKRERAAGKAVSSAAGPGGVLTSFRPGIQYLTDSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHH AASLGGIVMADREVSWVRRGKSAAWRVGCRDGGEYDADLVIVASPAHAASAILHDCDAGI HHHHCCEEEECCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH ASILESIPYASMTVVCLGYERELVSHPLDGFGYLIPKKEGRSILGTLWDSSMFENRAPTG HHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHH KVLLRSMVGGACFPDYVHMGDDELLGRVRGDMKDVMGIVAEPSFIRIFRHPQAIPQYTVG HHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEHHCCCCCCCCCCC HGERLKHLEERLACHPGLILTGNSYRGIGLNDCVAAAQRASDQALELLR CHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1372277; 8621504 [H]