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The map label for this gene is rimM [H]

Identifier: 118479064

GI number: 118479064

Start: 3686869

End: 3687450

Strand: Reverse

Name: rimM [H]

Synonym: BALH_3473

Alternate gene names: 118479064

Gene position: 3687450-3686869 (Counterclockwise)

Preceding gene: 118479065

Following gene: 118479063

Centisome position: 70.14

GC content: 34.19

Gene sequence:

>582_bases
TTGCATGTTCCATATGAGAAATGGGGATGCTTAATTTATATAGAAACCAGGGGTGACATACTGTTTATGACAAAATGGTT
TAACGTAGGAAAAATTGTAAATACTCATGGCGTAAAAGGAGAAATTCGTGTGGTTTCTCGTACTGACTTTCCAGAAGAGC
GATATAAAGTAGGGAATACGTTATACATATCGAATGAAAAAGGTGGAGAGCCTTTCCCAGTAAAGATTACTTCTCATCGT
CAACATAAAACATTTGATTTATTGACATTTGAAGGATACGGGAATGTAAATGAAGTAGAACAGTTTAAAGGTTCTCTTTT
AAAAGTGCCTGAAGATCAATTAGGTGAACTAGCTGAAGGTGAATATTACTATCATGAAATTATTGGTTGCAATGTTGTAA
CGGAAGAAGGAGAAGCGTTAGGGACAATAAAAGAAGTTTTATCTCCTGGTGCAAATGATGTTTGGGTAATTAAACGTCCA
AAAGGTCAAGATTTGTTAATTCCTTATATTGATGATGTTGTGCTTCAAGTTAACATTGAGAATAAATTAGTAACCATTCA
TGTAATGGAAGGGCTACTATAA

Upstream 100 bases:

>100_bases
AGTGGGACATCACAATAGTGAAAAAGTAACACTGGAAATTCAATAAACGTAAAAAGGGCGAGGAGTTATTCCTCTCCCTT
TTTTAACATTTAAAGAGAAG

Downstream 100 bases:

>100_bases
TGAAAATTGACATTTTAACATTGTTTCCAGATATGTTTACAGGTGTGTTTGGATCTTCAATTTTAAAGAAAGCACAAGAA
AAAGAAGCGGTAGAGCTTCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MHVPYEKWGCLIYIETRGDILFMTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHR
QHKTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRP
KGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL

Sequences:

>Translated_193_residues
MHVPYEKWGCLIYIETRGDILFMTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHR
QHKTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRP
KGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
>Mature_193_residues
MHVPYEKWGCLIYIETRGDILFMTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHR
QHKTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRP
KGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=164, Percent_Identity=27.4390243902439, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 21968; Mature: 21968

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVPYEKWGCLIYIETRGDILFMTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNT
CCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCHHHHCCCCE
LYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEG
EEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHCCCEEECCHHHHCCCCCC
EYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIE
CEEEEEEEECEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCEEEEEEEEC
NKLVTIHVMEGLL
CEEEEEEEECCCC
>Mature Secondary Structure
MHVPYEKWGCLIYIETRGDILFMTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNT
CCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCHHHHCCCCE
LYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEG
EEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHCCCEEECCHHHHCCCCCC
EYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIE
CEEEEEEEECEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCEEEEEEEEC
NKLVTIHVMEGLL
CEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA