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The map label for this gene is oppA [H]

Identifier: 118478828

GI number: 118478828

Start: 3418549

End: 3420255

Strand: Reverse

Name: oppA [H]

Synonym: BALH_3223

Alternate gene names: 118478828

Gene position: 3420255-3418549 (Counterclockwise)

Preceding gene: 118478829

Following gene: 118478827

Centisome position: 65.06

GC content: 35.97

Gene sequence:

>1707_bases
ATGAAGAAAAAGATGAAAAAGTTCACAGCGGTTGTAGCGCCAGTTTTAGCGATGAGTATGGCGTTGACAGCGTGTTCTGG
ATCTGGTGGGGAGAAGAAAACAACGAAGACGTCTAGTGGTGGTGGGGAAGAGAAAAAATCAGAAATTAAATACGCGGCAA
AACAAGTATTAAATCGTACAGAGAATCAAGAAATTCCGACGATGGATGTTTCAAAATCTACTGATACATTAGGTTCTCAA
ATTTTAGGGAACACAATGGAAGGTTTATATCGATTAGACAAAGATAATAAGCCAATCCCAGCTGCAGCAGAATCTAGTAC
GAAAAGCGAGGATGGCAAAAAATATACATTTAAATTACGTAAAGATGCAAAATGGTCAAACGGTGATCCTGTAACAGCGA
AAGATTTCGTATACGCATGGCAGCGCCTACTTGATAAAAATACAGCTGCAGAATATGCGTTTATTGCCTTCTATATTAAA
AACGCAGAGGCAATTAATAAAGGTGAAAAGCCACTAACAGATTTAGGAGCAAAAGCGGTAGATGATTATACGCTAGAAGT
AGAATTAGAGAAACCAGTACCATATTTCTTGAATTTAATGGCATTCCCATCTTACTATCCATTAAATGAAAAGTTCGTAA
AAGAAAAAGGAGATAAATTCGGTTTAGAAGCAGATACAACGTTGTATAACGGACCGTTCGTTATGGCTTCATGGAAACAT
GAACAAGGATGGCAGCTAAAGAAAAATGATAAGTACTGGGATAATAAGACTGTAAAATTAGAAGAAATTAACTATAGTGT
AGTAAAAGAAGTTGCGACGAAAGTAAACTTATATGATACAGGATCAATTGATTTCACGCTCTTATCAGGAGAATTCGTTG
ATAAATATAAATCGAACAAAGAAGAGTACGGCGAGTATTCGGAAGCAAGTACATTCTTCTTACGTTTAAATCAAAAGCGT
AACGGACAAGATACACCGTTAAAGAGCAAAAAACTTCGTGAAGCAATTGCATTATCAGTTGATAAAAAAGGCTTGGCGAA
TGTAATTTTAAATAATGGATCAAAAGCAACGGATCAATTGGTTCCAAAAGGGCTTGCAGCAGGACCAGACGGTAAAGATT
ACCAAGATACATTTAAAAATGGTCTGAAATATGATCCGAAAAAAGGTGCAGAAGCATGGGAAGAAGCGAAAAAAGAACTT
GGAAAAGATCAAGTTACAATTGAATTGTTAAGTTATGATGATGGAGTTGCAAAGAAAATCGGAGACTATGTAAAAGATCA
AATTGAAAAGAATTTAAAAGGCGTAACGATTAAAACGAAAATTCAGCCGTTCAAACAAAAGTTAAAATTAGAGTCAGCTC
AAGATTATGAAATCTCTTACGCAGGTTGGAGCCCAGACTATGCGGATCCAATGACGTTTATTGATATGTTTGAATCGAAG
AGCCCATATAACCAAATGAGTTATTCGAATCCAAAATATGATGAAATGGTAGCGAAAGCAGGTAATGAATTACTGTCTGA
TCCGAAGAAGCGTTGGGAAACGTTAGGAAAAGCAGAGAAATTATTCCTTGAAGAAGATGCAGGATTAGTTCCTTTATATC
AAACAGGAAGAGCGTATGTAATGAAACCGAATGTAAAAGGAATTGTGAAACATAACATTAGTCCAGAATATAGCTTTAAG
TGGGCTTATGTAACGGAAGGTAAATAA

Upstream 100 bases:

>100_bases
AAAAACAGTAGAATATTAATTAATAAGAATTTTCTGATAAATAACCGTTAGGAAATTACTCAAATCTAGTTTCGTACATA
TAATTGGGGAGGGTACAAAA

Downstream 100 bases:

>100_bases
TAAAAAAGAGTGTGTTTAAAAGTAGATATGAAGTGACCCCTAAAAGTTAGACACGGTTATTTCATTAGGCAGCTTGATAA
AAGTGAGTTCGGTATTGTAC

Product: oligopeptide transporter, periplasmic-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MKKKMKKFTAVVAPVLAMSMALTACSGSGGEKKTTKTSSGGGEEKKSEIKYAAKQVLNRTENQEIPTMDVSKSTDTLGSQ
ILGNTMEGLYRLDKDNKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDPVTAKDFVYAWQRLLDKNTAAEYAFIAFYIK
NAEAINKGEKPLTDLGAKAVDDYTLEVELEKPVPYFLNLMAFPSYYPLNEKFVKEKGDKFGLEADTTLYNGPFVMASWKH
EQGWQLKKNDKYWDNKTVKLEEINYSVVKEVATKVNLYDTGSIDFTLLSGEFVDKYKSNKEEYGEYSEASTFFLRLNQKR
NGQDTPLKSKKLREAIALSVDKKGLANVILNNGSKATDQLVPKGLAAGPDGKDYQDTFKNGLKYDPKKGAEAWEEAKKEL
GKDQVTIELLSYDDGVAKKIGDYVKDQIEKNLKGVTIKTKIQPFKQKLKLESAQDYEISYAGWSPDYADPMTFIDMFESK
SPYNQMSYSNPKYDEMVAKAGNELLSDPKKRWETLGKAEKLFLEEDAGLVPLYQTGRAYVMKPNVKGIVKHNISPEYSFK
WAYVTEGK

Sequences:

>Translated_568_residues
MKKKMKKFTAVVAPVLAMSMALTACSGSGGEKKTTKTSSGGGEEKKSEIKYAAKQVLNRTENQEIPTMDVSKSTDTLGSQ
ILGNTMEGLYRLDKDNKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDPVTAKDFVYAWQRLLDKNTAAEYAFIAFYIK
NAEAINKGEKPLTDLGAKAVDDYTLEVELEKPVPYFLNLMAFPSYYPLNEKFVKEKGDKFGLEADTTLYNGPFVMASWKH
EQGWQLKKNDKYWDNKTVKLEEINYSVVKEVATKVNLYDTGSIDFTLLSGEFVDKYKSNKEEYGEYSEASTFFLRLNQKR
NGQDTPLKSKKLREAIALSVDKKGLANVILNNGSKATDQLVPKGLAAGPDGKDYQDTFKNGLKYDPKKGAEAWEEAKKEL
GKDQVTIELLSYDDGVAKKIGDYVKDQIEKNLKGVTIKTKIQPFKQKLKLESAQDYEISYAGWSPDYADPMTFIDMFESK
SPYNQMSYSNPKYDEMVAKAGNELLSDPKKRWETLGKAEKLFLEEDAGLVPLYQTGRAYVMKPNVKGIVKHNISPEYSFK
WAYVTEGK
>Mature_568_residues
MKKKMKKFTAVVAPVLAMSMALTACSGSGGEKKTTKTSSGGGEEKKSEIKYAAKQVLNRTENQEIPTMDVSKSTDTLGSQ
ILGNTMEGLYRLDKDNKPIPAAAESSTKSEDGKKYTFKLRKDAKWSNGDPVTAKDFVYAWQRLLDKNTAAEYAFIAFYIK
NAEAINKGEKPLTDLGAKAVDDYTLEVELEKPVPYFLNLMAFPSYYPLNEKFVKEKGDKFGLEADTTLYNGPFVMASWKH
EQGWQLKKNDKYWDNKTVKLEEINYSVVKEVATKVNLYDTGSIDFTLLSGEFVDKYKSNKEEYGEYSEASTFFLRLNQKR
NGQDTPLKSKKLREAIALSVDKKGLANVILNNGSKATDQLVPKGLAAGPDGKDYQDTFKNGLKYDPKKGAEAWEEAKKEL
GKDQVTIELLSYDDGVAKKIGDYVKDQIEKNLKGVTIKTKIQPFKQKLKLESAQDYEISYAGWSPDYADPMTFIDMFESK
SPYNQMSYSNPKYDEMVAKAGNELLSDPKKRWETLGKAEKLFLEEDAGLVPLYQTGRAYVMKPNVKGIVKHNISPEYSFK
WAYVTEGK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=507, Percent_Identity=31.5581854043393, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1789397, Length=509, Percent_Identity=28.8801571709234, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI87081878, Length=534, Percent_Identity=27.3408239700375, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1787762, Length=455, Percent_Identity=28.1318681318681, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787052, Length=499, Percent_Identity=23.8476953907816, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789887, Length=336, Percent_Identity=26.7857142857143, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789966, Length=484, Percent_Identity=22.9338842975207, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63917; Mature: 63917

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKMKKFTAVVAPVLAMSMALTACSGSGGEKKTTKTSSGGGEEKKSEIKYAAKQVLNRT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ENQEIPTMDVSKSTDTLGSQILGNTMEGLYRLDKDNKPIPAAAESSTKSEDGKKYTFKLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
KDAKWSNGDPVTAKDFVYAWQRLLDKNTAAEYAFIAFYIKNAEAINKGEKPLTDLGAKAV
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCEEEEEEEEECHHHHCCCCCCHHHHCCHHC
DDYTLEVELEKPVPYFLNLMAFPSYYPLNEKFVKEKGDKFGLEADTTLYNGPFVMASWKH
CCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCEEEEECCC
EQGWQLKKNDKYWDNKTVKLEEINYSVVKEVATKVNLYDTGSIDFTLLSGEFVDKYKSNK
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCEEECCCEEEEEECCHHHHHHHCCH
EEYGEYSEASTFFLRLNQKRNGQDTPLKSKKLREAIALSVDKKGLANVILNNGSKATDQL
HHHCCHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEECCCCHHHHHH
VPKGLAAGPDGKDYQDTFKNGLKYDPKKGAEAWEEAKKELGKDQVTIELLSYDDGVAKKI
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
GDYVKDQIEKNLKGVTIKTKIQPFKQKLKLESAQDYEISYAGWSPDYADPMTFIDMFESK
HHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCC
SPYNQMSYSNPKYDEMVAKAGNELLSDPKKRWETLGKAEKLFLEEDAGLVPLYQTGRAYV
CCCCCCCCCCCCHHHHHHHHCHHHHCCHHHHHHHHCHHHHHHEECCCCEEEEEECCCEEE
MKPNVKGIVKHNISPEYSFKWAYVTEGK
ECCCCCCCEECCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKKKMKKFTAVVAPVLAMSMALTACSGSGGEKKTTKTSSGGGEEKKSEIKYAAKQVLNRT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ENQEIPTMDVSKSTDTLGSQILGNTMEGLYRLDKDNKPIPAAAESSTKSEDGKKYTFKLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
KDAKWSNGDPVTAKDFVYAWQRLLDKNTAAEYAFIAFYIKNAEAINKGEKPLTDLGAKAV
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCEEEEEEEEECHHHHCCCCCCHHHHCCHHC
DDYTLEVELEKPVPYFLNLMAFPSYYPLNEKFVKEKGDKFGLEADTTLYNGPFVMASWKH
CCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCEEEEECCC
EQGWQLKKNDKYWDNKTVKLEEINYSVVKEVATKVNLYDTGSIDFTLLSGEFVDKYKSNK
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCEEECCCEEEEEECCHHHHHHHCCH
EEYGEYSEASTFFLRLNQKRNGQDTPLKSKKLREAIALSVDKKGLANVILNNGSKATDQL
HHHCCHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEECCCCHHHHHH
VPKGLAAGPDGKDYQDTFKNGLKYDPKKGAEAWEEAKKELGKDQVTIELLSYDDGVAKKI
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
GDYVKDQIEKNLKGVTIKTKIQPFKQKLKLESAQDYEISYAGWSPDYADPMTFIDMFESK
HHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCC
SPYNQMSYSNPKYDEMVAKAGNELLSDPKKRWETLGKAEKLFLEEDAGLVPLYQTGRAYV
CCCCCCCCCCCCHHHHHHHHCHHHHCCHHHHHHHHCHHHHHHEECCCCEEEEEECCCEEE
MKPNVKGIVKHNISPEYSFKWAYVTEGK
ECCCCCCCEECCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]