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The map label for this gene is xerC [H]

Identifier: 118477873

GI number: 118477873

Start: 2373629

End: 2374582

Strand: Reverse

Name: xerC [H]

Synonym: BALH_2217

Alternate gene names: 118477873

Gene position: 2374582-2373629 (Counterclockwise)

Preceding gene: 118477879

Following gene: 118477872

Centisome position: 45.17

GC content: 43.19

Gene sequence:

>954_bases
ATGCTTATTAAGTTCTCCATAAAGGAATACATTGAAGACCGCTCCCTCGAGAATCTATCTAGAAGAACTCTAGAATCTTA
TGAGAATACACTAACAGAGTTCCGACTCTGGTTGAATGGCTGTAATGGTAATGAAGAAGAAGCCAGCTCTAGATCTATCA
CTCATATAGAAGATATCACGAGCCAGCACGTTAAGGGGTACATGAGGTATTGCTATCAGGAGAGACGAAACAGCCATACT
ACAGTAGCAGGCAAGCTCACCAATATCAAAGTGTACTTTAACTACTTAGCCAACGAGGGGTTAATTGATGAGAGAGACAA
TCCTATTCTCCGAGTAAAGAATCCTCAGAAAGATACTAATGTAGAGACACTTACAGAGGAACAAGTTAGGCTTATGCTCC
GTCACCTCCGTAGGCGTAGACGAGTAGACGACTTCTATCACTACAGGGACTACACTCTGGTTGTCTTCCTCTTAGGTACA
GGAGCTAGGCTAGGTGAGATTATGGATCTTTGCTGGAAGGATATCGACCTCAAGGACGGACAAGTAGTGTTTCCTGCTAC
AGGTAAGGCTCGTACTCAGCAAGGACAACCACTAGGTGCTAAGCTAGTGAGCGAACTCAAGGAGTACAAGCAATACTTAG
AGAACGATACTTACGGATTACCTGCCTATCTATTTACAACAAGGACTGGGAGAAAGCTCAGTAGAGAGGCCATTAAGTTG
GTCTTTGTTAGGCTGGCTCAAGAATTGAAGTTCGAGTACGGTAGAGTATCAGCGCATTCTCTGAGGCACTTCTACTGTAG
CTCACTTATTAAAGCTGGAGTTAGCCCTTTTGTGGTACAGAAGCTAATGAGACATTCCAAGATAGAAACAACTATGAAGT
ATGTAACCCTGTGGGGTCAGTCTCTACAGGAAGGCAACGAGAAAGGCAATCCCCTCAATAATTTAAATATCTAA

Upstream 100 bases:

>100_bases
GTTGTTACCTACATAGCACAAGCTCTGCCTACATTGACAAACCTCTCTAGGTCAAATCTATTGAGTATACACCTAACAGT
ATGCACAAGGAGGAGATCGA

Downstream 100 bases:

>100_bases
GCATAACAAAAAAGAGTCCTGCTCTAGTTTGGCGGCCAGACAGGACTCTCTCTCACAAAATAACTATGGAGTGCATGTAT
AGAACAACATTACACTATGG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLIKFSIKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKGYMRYCYQERRNSHT
TVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNVETLTEEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGT
GARLGEIMDLCWKDIDLKDGQVVFPATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKL
VFVRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNPLNNLNI

Sequences:

>Translated_317_residues
MLIKFSIKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKGYMRYCYQERRNSHT
TVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNVETLTEEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGT
GARLGEIMDLCWKDIDLKDGQVVFPATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKL
VFVRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNPLNNLNI
>Mature_317_residues
MLIKFSIKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKGYMRYCYQERRNSHT
TVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNVETLTEEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGT
GARLGEIMDLCWKDIDLKDGQVVFPATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKL
VFVRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNPLNNLNI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=24.1157556270096, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37038; Mature: 37038

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKFSIKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDIT
CEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
SQHVKGYMRYCYQERRNSHTTVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTN
HHHHHHHHHHHHHHHCCCCCEEEEEHEEEEEEEEEHHCCCCCCCCCCCEEEECCCCCCCC
VETLTEEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCC
QVVFPATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKL
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHH
VFVRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLQEGNEKGNPLNNLNI
HHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIKFSIKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDIT
CEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHH
SQHVKGYMRYCYQERRNSHTTVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTN
HHHHHHHHHHHHHHHCCCCCEEEEEHEEEEEEEEEHHCCCCCCCCCCCEEEECCCCCCCC
VETLTEEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDG
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCC
QVVFPATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKL
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHH
VFVRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLQEGNEKGNPLNNLNI
HHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA