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The map label for this gene is yhgD [H]

Identifier: 118476681

GI number: 118476681

Start: 1103279

End: 1103875

Strand: Direct

Name: yhgD [H]

Synonym: BALH_0959

Alternate gene names: 118476681

Gene position: 1103279-1103875 (Clockwise)

Preceding gene: 118476680

Following gene: 118476682

Centisome position: 20.99

GC content: 31.66

Gene sequence:

>597_bases
TTGGTCATTTTTGGAGGTGACGATGTGGCGATAGATCGAAAACGTTCTATTATTGAAGCTGCAACAAAGTCTTTTTCAGC
GTTCGGCTATAAAGCAACAACGATGGATCAAGTAGCGAAATTAGCGAATGTAGGAAAAGGAACGATTTATACTTTTTTCA
AAAATAAAGAAGAGCTATTTGGTGAAATTATTTCTAATTTAATTACAGAAATGAAGCAAGTTGCAGAAAATGCAATTCGT
TCAGATGTTTCATTTTTTGAAAATGTACATAGAGCATTATATAGCATATTAGAATTCAGAAAAGAACATCAGCTCATGAT
TAAGTTAATTCAAGAAGAGCGCGATATGGGAACAAAAGAAGTACAAGAAGTGATGCAACAAGTAGATGTAGAAATCGTTT
CTTTCATTCAATCGTATTTAAAGATTGCGATTGAAAAAGGTGAAATTAGCAAATGTGATCCAGAAATTACAGCATTTATT
ATGCTTCGCTTATACGTATCGCTTATTTTTGATTGGGAAAAAAATCATGAACCGCTAGAAAAAGAAAAAATCGCAGAATT
ATTTGAACTTTATTTATTAAGAGGATTGTCAAACTAA

Upstream 100 bases:

>100_bases
GACTGGAATTTTTTATACTGGAAATAATACAAAAGAGAACTTGTATACAATGTAAGCGTGTGGTAATATCAAAGATGTAC
TGATTGACTATATTATCCAA

Downstream 100 bases:

>100_bases
GATAATCCTTTTATTATTATAAAAAGTGACCAATTGAATGAAACGGTCATATATTTATTTTAGGAGGGATAATAGAAATA
TTCATTTCATAGTAAGGAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MVIFGGDDVAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIR
SDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSFIQSYLKIAIEKGEISKCDPEITAFI
MLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLRGLSN

Sequences:

>Translated_198_residues
MVIFGGDDVAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIR
SDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSFIQSYLKIAIEKGEISKCDPEITAFI
MLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLRGLSN
>Mature_198_residues
MVIFGGDDVAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIR
SDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSFIQSYLKIAIEKGEISKCDPEITAFI
MLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLRGLSN

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22862; Mature: 22862

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIFGGDDVAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELF
CEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHH
GEIISNLITEMKQVAENAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VQEVMQQVDVEIVSFIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
KEKIAELFELYLLRGLSN
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVIFGGDDVAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELF
CEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCHHHHH
GEIISNLITEMKQVAENAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VQEVMQQVDVEIVSFIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
KEKIAELFELYLLRGLSN
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377 [H]