Click here to switch to the map view.

The map label for this gene is yhfW [H]

Identifier: 118476111

GI number: 118476111

Start: 406908

End: 408497

Strand: Reverse

Name: yhfW [H]

Synonym: BALH_0355

Alternate gene names: 118476111

Gene position: 408497-406908 (Counterclockwise)

Preceding gene: 118476113

Following gene: 118476110

Centisome position: 7.77

GC content: 36.1

Gene sequence:

>1590_bases
ATGAATTTCATCTCATATGGAAATATTAAAAGGAAAATTGTTCTAAATCAGGAGGTTTCCTTAATGACAAGCGATACATT
TCCACAATTCCCATCATCTTATTGGATTGAATCTACTCAACTCCCTACTTTTCCCCCTTTATCTGAAAATATAAAGACAA
AAGTTGCTGTTATCGGTGCTGGTATTACAGGTATTACTACTGCCTATTTACTTGCAAAAGAAGGCATCGATGTTGTATTA
ATTGATTCTGGTCTTATTTTAAACGGGACGACTGGGCATACAACAGCAAAGATAACAGCGCAACATGATCTTATTTATGA
TGAATTAATAAATCATTTCGGTATGGAAAAGGCCGGACTTTACTATGAATCAAATAATCATGCTCTACAATTTATTAATG
AAACTGTGCAAACATATAAAATCGACTGTAATTTCTCAAATGAAGATTCATATTTATATACAACTACCGATAAGGGATTA
AGAAATTTATCGAAAGAATATGAAGCCTATCAAAAATTAAATATACCTTGTGACTATGTTCAATCTCTATCGATTCCAAT
TCCAGTACAATCTGCACTTGTCATGAAAAACCAAGCACAATTCCATCCCCTTCTTTATTTGAAAACACTTCTAGAAAAGT
TTGTGGAAATGGGCGGAAAAGTTTATGAACAAACAACAGCTATGGATGTGGAAAAAGGAGATTCTCCACAAATCATTACA
AAGGAAGGCCATCGCATCACTTGTGAATATGTTGTTTCTTGTTCACATTTCCCTTTTTATGATGCAAATAGCTTTTTCTT
TACGCGTATGTATGCTGAACGCTCTTATGCCCTTGCAATTAAAGCGAAAACAGATTATCCAGGTGGTATGTATTTAAGTA
TTGATGATCCAAAACGCTCTTTACGCTATACAACAAACAATGGTGAAAAATTAATTTTAATTGGCGGAGAAAGTCATAAA
ACAGGCCAAGGAATAAACACGATGCTTCATTATGAAGCACTGTATTCTTTTGCAGAAGCAACTTTTGGAGTAGACGAGGC
TCCTTATAGATGGTCAGCACAAGATTTAATCACGCTAGATAAGCTCCCTTATATCGGACATATTAACGAAAGGAATCCAA
ATATATTTGTTGCAACTGGATATCGTAAATGGGGAATGACAACTGGAACTGCTGCCGCTCATTTACTGAAGGATTCTATT
CTAAAAGTACACAGTCCATATAAAGAACTCTATGCACCTTCACGCTTTCATGCAAATCCAGATATAAAAACGTTCCTCTC
CCAAAACATTGATGTTGCGAAACATTTAATTGAAGGAAAGATTGAAACCGCATTACGTAAGCCAGAAGATCTCGAAGTTG
GTGAAGGATCTGTCGTACATGTTAACGGGAAACGAGCAGGTGCTTATAAAGACAAAGAAGGAAAATTACATATTGTCGAT
ACAACTTGTACACATCTCGGCTGCGAAGTTGAGTGGAATAATGGTGATTGCACTTGGGATTGTCCTTGTCACGGTTCCCG
CTTTTCAATTGAGGGAGACGTTATTGAAGGTCCAGCAGATCAACCGTTAAAGCGAGTTGATAATGAGTAA

Upstream 100 bases:

>100_bases
CACAACTCCTACCTCTTCATACCAACAAGAACTAATAATTATATTAAGATAATTTTATCTTTCTTTTAAATAAAAATAGC
CTTCCTCTAAAACAGCACAC

Downstream 100 bases:

>100_bases
ACAAATAAAGAAGTTCAACAGAAATCCTGTTGAACTTCTTTATTTGTTATAAAACCTTTTCAGATAAATTTCGACAGGAA
GGAGGGAAATATTAACATGA

Product: oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MNFISYGNIKRKIVLNQEVSLMTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVL
IDSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGL
RNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQIIT
KEGHRITCEYVVSCSHFPFYDANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHK
TGQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSI
LKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVD
TTCTHLGCEVEWNNGDCTWDCPCHGSRFSIEGDVIEGPADQPLKRVDNE

Sequences:

>Translated_529_residues
MNFISYGNIKRKIVLNQEVSLMTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVL
IDSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGL
RNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQIIT
KEGHRITCEYVVSCSHFPFYDANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHK
TGQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSI
LKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVD
TTCTHLGCEVEWNNGDCTWDCPCHGSRFSIEGDVIEGPADQPLKRVDNE
>Mature_529_residues
MNFISYGNIKRKIVLNQEVSLMTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGAGITGITTAYLLAKEGIDVVL
IDSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLYYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGL
RNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQIIT
KEGHRITCEYVVSCSHFPFYDANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYTTNNGEKLILIGGESHK
TGQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSI
LKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVD
TTCTHLGCEVEWNNGDCTWDCPCHGSRFSIEGDVIEGPADQPLKRVDNE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=398, Percent_Identity=23.3668341708543, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 59397; Mature: 59397

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00136 SUBTILASE_ASP ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFISYGNIKRKIVLNQEVSLMTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGA
CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEC
GITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGL
CHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCE
YYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYV
EEECCCCHHHHHHHCCEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHH
QSLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQIIT
HHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCCCCCEEE
KEGHRITCEYVVSCSHFPFYDANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRS
CCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCC
LRYTTNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLD
EEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
KLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANP
CCCCEEECCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
DIKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVD
CHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
TTCTHLGCEVEWNNGDCTWDCPCHGSRFSIEGDVIEGPADQPLKRVDNE
ECHHHEEEEEEECCCCEEEECCCCCCEEEECCCEECCCCCCHHHHCCCC
>Mature Secondary Structure
MNFISYGNIKRKIVLNQEVSLMTSDTFPQFPSSYWIESTQLPTFPPLSENIKTKVAVIGA
CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEC
GITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGL
CHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCE
YYESNNHALQFINETVQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYV
EEECCCCHHHHHHHCCEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHH
QSLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQIIT
HHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCCCCCEEE
KEGHRITCEYVVSCSHFPFYDANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRS
CCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCCCC
LRYTTNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEATFGVDEAPYRWSAQDLITLD
EEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
KLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANP
CCCCEEECCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
DIKTFLSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVD
CHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
TTCTHLGCEVEWNNGDCTWDCPCHGSRFSIEGDVIEGPADQPLKRVDNE
ECHHHEEEEEEECCCCEEEECCCCCCEEEECCCEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]