Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 118475937

GI number: 118475937

Start: 178349

End: 178843

Strand: Reverse

Name: rpoE [C]

Synonym: BALH_0169

Alternate gene names: 118475937

Gene position: 178843-178349 (Counterclockwise)

Preceding gene: 118475938

Following gene: 118475936

Centisome position: 3.4

GC content: 30.71

Gene sequence:

>495_bases
ATGATGGGAAAAGAAAATATATTAACCTCCTATCTTATCAATTTAGGAGAGGAAGTGTTCAAACTATTATTAGCGAAAGG
GGCTATAAAAGAAGATGCAGAAGACATCATCCAAAATACCTTCTATAAAGTATACACATTGCTAGATAACTTAACCGAGG
ATAACATACGTCCATGGTTTTTCAGAGTCGCATTAAATGAATACATTGACTTAAAGAGAAAAAAAGAGCAGCAGAACATC
TATTTGACTGAAGAGGTTTATTCAAAATTACAATATACAGACCGAGAACTGGATGCTGTTTTAAATAAAGATGAGATTTT
CTATCTATTAAAAGATATAAAACTAGAATATAAAGAAGCCTTCTTTTTAAAGTATTATTACGATTTTACATATGAAGAAA
TTGCACTAATACTAGATATTCGAGTAAATAGCGTCAAACAAAAGTTACATCGTGCACGTAAAACAATTCATTCTACAGTA
GGGGGAAAACCTTAA

Upstream 100 bases:

>100_bases
GATTGTTATATGCCTTTTTTATTTGTATCAAGAACAAAACTTTAATTTAAGTGTATACATTTACTATTACCTATTCGTTG
TATAAGTGTAGGGAGGAAAA

Downstream 100 bases:

>100_bases
TGGATACTTCTTTAAAAAATGCATTAAAAAAAGCGAAAAGGAAACAGTTACTTAAAATCATCATTACTTCTATTCTCGTT
GTCATCATACTTATCCCTAT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Subunit Ecf Family; ECF Subfamily RNA Polymerase Sigma-24 Subunit; DNA Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70factor; RNA Polymerase Factor Sigma C; Sigma-70 Factor; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-E Factor; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor SigH; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF Sigma Factor

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MMGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDNLTEDNIRPWFFRVALNEYIDLKRKKEQQNI
YLTEEVYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTV
GGKP

Sequences:

>Translated_164_residues
MMGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDNLTEDNIRPWFFRVALNEYIDLKRKKEQQNI
YLTEEVYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTV
GGKP
>Mature_164_residues
MMGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDNLTEDNIRPWFFRVALNEYIDLKRKKEQQNI
YLTEEVYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTV
GGKP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19613; Mature: 19613

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDNLTEDNIRPWF
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
FRVALNEYIDLKRKKEQQNIYLTEEVYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEA
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
FFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMGKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDNLTEDNIRPWF
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
FRVALNEYIDLKRKKEQQNIYLTEEVYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEA
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
FFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA