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The map label for this gene is hlyB [H]

Identifier: 117922047

GI number: 117922047

Start: 4335221

End: 4337125

Strand: Direct

Name: hlyB [H]

Synonym: Shewana3_3611

Alternate gene names: 117922047

Gene position: 4335221-4337125 (Clockwise)

Preceding gene: 117922039

Following gene: 117922051

Centisome position: 87.19

GC content: 51.39

Gene sequence:

>1905_bases
GTGAAGAATTTAAACATTAGCACTAGGATAGTGTTAGGGATCAGCCTACTACTATTTGCGGTGATGAGCTTTATCATGCC
GCTGGTGCTATCGGAATTCAGTCGCCAAATTCGCGAGTCCGAGCAGCGAGAACTGCACAAACTGTACGAAACCGCAGTCG
CCAATATCGCCTCATCGGGACAAAGGGCGCAGGCGATGGCGACATTAATCTCCTTAACCCCCGAGATCCAAAGCAGCTTT
GCCGCACGCGACCATGATGAATTACTGCAACGCACATTGCCGCTATTTACCCGCCTGAAACAAGATTTTGCCGTGCAGCA
GTTCCAGTTCCACACCCCGCCTGCCACGTCGTTTTTACGCCTACACCGCCCTGAGAAATTTGGCGACGACCTCACAGCGA
TCCGTAAAACCATTGTCGAAACTAACACGCAAAAACAACCGCTTAGCGGCTTAGAATATGGAGTGGAAGGCTTAGGGATC
CGCGGGCTAGTGCCGATGAATTACCAAGGGCAGCACACTGGCTCGGTGGAATTTGGCATGTCCTTTGGTCAAACCTTCTT
CGACCACTTTAAAAATGCTTATCAGGCCGAGATTAGTCTCCTGCTTCCAAAAGATGGCGGCTTTGTCCCCTTCGGTGGCA
CGTTTACCACAGACACCAGCGCCGCCAGTGAACTTGAAAGTGTTATGCAAGGCGACGAAGTTATCCGCACCATAGATTTA
AATGGCAAGAGCTTTGCGCTCTACCGCCATGGAATAAAGGACTATTCGGGCAAAACCTTCGGGGTATTAGATATTGCGCT
GGACAGAAGCCATTCTGAGCAAGCAATGTCCGATATTCGTTTGAAACTCATCATGATAGGGGTCATAGCCCTCTTAATCG
GTACCGCAATCGCGTGGTTTATCGCTAAGAGTATTACCCGTCCAATTGCCGAAACCACTGACGCACTCAATGATATTGCT
GAAGGTGAAGGCGATTTAACCCGTCGTATCGAAGTGAAGAGCAAGGATGAAATGGCCCAACTTGCCCAGGCCTTTAACCG
GTTCGCAGAGAAAATCCACGCCACTGTGGCCCAAGTATCAGACTCGACCAGCTTGCTCGCGACATCGGCCGAAGAAATGT
CCGCCATCACCCATGAAACCCAGCAAATGGCGAATCGGCAACACCTCGAAACCGAACAGGTTGCCACCGCGATGAACGAA
ATGGCGGCAACAGTGCAAGAGGTAGCCCACAATGCCACCGACGCCGCCGATGCTGCAACCCATGCCAGCGAGTCTACCGA
GCAGGGCAAACTATTAGTCGAAAAAGTCATATCGACCATTAGCTTGCTTGCCGATGAGATTGCCCAGGCGGCCAATGCCA
TTAACGAGCTAGAGCGCAATACCACGCAAATTGATTCGGTATTAGTCGTTATCCGCAATATTGCCGATCAAACCAACTTA
CTCGCCCTCAATGCCGCAATTGAGGCCGCCCGCGCCGGAGAACAAGGCCGTGGCTTTGCCGTAGTAGCAGATGAGGTACG
CACACTCGCCAGCCGTACTCAGGCTTCCACCACAGAAATTCAGCAGATGATAGAAACGTTGCAACAAAGTGCCAAGGCCA
CGGTCAGTAGCATGAATACCAGCACGGCCACCACACAGAGCTGTGTATCACTGGTGCATGAGGCGGGTTCTGCCCTCGAG
GCCATTACCCAAGCGGTATCTACCATCAGCCAAATGAACATTCAAATCGCCAGTGCCGCCAATGAGCAGTGCGCCGTTTC
GGCGGAAATTAATAAAAACGTCAATAATATTAATGATATTGCGACCAACGCGACCGAGAGTGCTATGCAAACCGCGCGGG
CGGGAGATGAACTGGCGCAGCTTTCAATGCGCTTAACGACTCTGCTCTCCCAATTTAAGATTTAG

Upstream 100 bases:

>100_bases
CAACTGAAAAAGGCTAAGCCGCTCCCAAATCTAAAAAGCAGTATCTCTATAATATTCAAAAAGATAATTAGGCAGGCATA
CGGATATTTGGAGGTTAACT

Downstream 100 bases:

>100_bases
GATTTAGGATTTAGGAATTAGGAATTAGCCAAAAACAAAACGCCGCTCAGTAGCGGCGTTTTTATGGATGTTGACTGCGT
TATACCGCCTTTGGGCGAAC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 634

Protein sequence:

>634_residues
MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIASSGQRAQAMATLISLTPEIQSSF
AARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGI
RGLVPMNYQGQHTGSVEFGMSFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEVIRTIDL
NGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIA
EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNE
MAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNL
LALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE
AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI

Sequences:

>Translated_634_residues
MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIASSGQRAQAMATLISLTPEIQSSF
AARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGI
RGLVPMNYQGQHTGSVEFGMSFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEVIRTIDL
NGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIA
EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNE
MAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNL
LALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE
AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI
>Mature_634_residues
MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIASSGQRAQAMATLISLTPEIQSSF
AARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGI
RGLVPMNYQGQHTGSVEFGMSFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEVIRTIDL
NGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIA
EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNE
MAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNL
LALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE
AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=304, Percent_Identity=33.8815789473684, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788195, Length=287, Percent_Identity=33.1010452961672, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1787690, Length=354, Percent_Identity=29.0960451977401, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788194, Length=323, Percent_Identity=32.5077399380805, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1789453, Length=342, Percent_Identity=28.6549707602339, Blast_Score=113, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 68849; Mature: 68849

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIASSG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRAQAMATLISLTPEIQSSFAARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSFLR
HHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LHRPEKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGIRGLVPMNYQGQHTGSVEFGM
HCCCHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCHHHHH
SFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEVIRTIDL
HHHHHHHHHHHHHHHHHEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEC
NGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWF
CCCEEHHHHHCHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
LALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNT
EHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEHHHHCCCHHHHHH
ATNATESAMQTARAGDELAQLSMRLTTLLSQFKI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNLNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYETAVANIASSG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRAQAMATLISLTPEIQSSFAARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSFLR
HHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LHRPEKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGIRGLVPMNYQGQHTGSVEFGM
HCCCHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCHHHHH
SFGQTFFDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEVIRTIDL
HHHHHHHHHHHHHHHHHEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEC
NGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWF
CCCEEHHHHHCHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
LALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNT
EHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEHHHHCCCHHHHHH
ATNATESAMQTARAGDELAQLSMRLTTLLSQFKI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]