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The map label for this gene is agmR [H]

Identifier: 117921896

GI number: 117921896

Start: 4146224

End: 4146895

Strand: Direct

Name: agmR [H]

Synonym: Shewana3_3459

Alternate gene names: 117921896

Gene position: 4146224-4146895 (Clockwise)

Preceding gene: 117921895

Following gene: 117921898

Centisome position: 83.39

GC content: 46.58

Gene sequence:

>672_bases
ATGTCTCAGATAAAAGTCGCCATTGCTGATGATCATCCATTATTTCGTACAGCCTTAACACAAGCTGTTCTCAAGAATGT
GAATACGGCGGAAGTATTGGAAGCGGAAAACTTTCAAGAATTAATTACGCTCGTTGAGAATAATCCTGATATTGAACTTA
TCTTTCTCGATTTACATATGCCCGGCAATGAGGGCTTTACCGGCTTAACCCTACTACAGAATCATTTTCCCGATATCGCG
GTGATCATGGTGTCCTCCGATGATCAGCCCGAGATTATCCGTAAGGCCATTAACTTTGGCGCCAGTGCGTTTATCCCCAA
ATCCGCCAGCTTAACCCAGATCTCCACCGCGATTGCCACAGTGCTCGAAGGGGAAGTCTGGCTACCGGAACACACGGATA
TCAATGTCGATCAGCAAACCGCTGCCGAGCATCAACGTTTAGCGAAGCAACTGGCACAATTAACCCCGCAGCAGTACACA
GTGCTGGCCAGCATTGCCAATGGACGCTTAAACAAGCAGATCGCCTATGATCTTGATATTAAAGAGACCACGGTAAAAAA
ACACGTATCGGCGATACTGGTTAAACTCGAAGTCTACAACCGCACTCAAGCGGGCTTAGTCTTTCAACAATTGATGATAA
CCAGCAACGATAAACCGCCGATCAGCGCCTAA

Upstream 100 bases:

>100_bases
CGACTCCCATGAGTCGGTTATTAATTTAACGGCTTTAAATATTATCTAGCATTAATTTCCAATAGGATTAAACTGGGTTA
AAAAATAAAGGGAACGGATT

Downstream 100 bases:

>100_bases
CTAACCTAGGCTCCAGAATTCAAACCTAAAGAAAAACAGTGGAACTAAGCCACTGTTTTTTTTATCAGCATTTACCAATC
CGAAAGCACGAGAGTGCCGA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHMPGNEGFTGLTLLQNHFPDIA
VIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYT
VLASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQAGLVFQQLMITSNDKPPISA

Sequences:

>Translated_223_residues
MSQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHMPGNEGFTGLTLLQNHFPDIA
VIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYT
VLASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQAGLVFQQLMITSNDKPPISA
>Mature_222_residues
SQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHMPGNEGFTGLTLLQNHFPDIAV
IMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYTV
LASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQAGLVFQQLMITSNDKPPISA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=30.622009569378, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=26.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788546, Length=209, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789937, Length=205, Percent_Identity=24.8780487804878, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787473, Length=201, Percent_Identity=31.8407960199005, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=27.4111675126904, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=21.3930348258706, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24620; Mature: 24489

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHM
CCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEC
PGNEGFTGLTLLQNHFPDIAVIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIAT
CCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VLEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGRLNKQIAYDLDI
HHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCEEEEECCC
KETTVKKHVSAILVKLEVYNRTQAGLVFQQLMITSNDKPPISA
HHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHM
CCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEC
PGNEGFTGLTLLQNHFPDIAVIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIAT
CCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VLEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGRLNKQIAYDLDI
HHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEEHHHCCCCCCEEEEECCC
KETTVKKHVSAILVKLEVYNRTQAGLVFQQLMITSNDKPPISA
HHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]