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The map label for this gene is 117921777

Identifier: 117921777

GI number: 117921777

Start: 4007172

End: 4007891

Strand: Direct

Name: 117921777

Synonym: Shewana3_3339

Alternate gene names: NA

Gene position: 4007172-4007891 (Clockwise)

Preceding gene: 117921776

Following gene: 117921778

Centisome position: 80.59

GC content: 54.17

Gene sequence:

>720_bases
ATGAAAACAGATCGGATGCCAAACTCACATTCTGCCCCAATCCCCCCCGCCCCACTCAAAGCCACTGAAACCTTAGCCAA
TGGCAACACAACGGCGGAAGTGTGCACCAATGAAACCTGCGCCAACGAAACCTTAGTCTATGATATTCGCAGGAGTCGTT
ACCTGAATATCACCGGCCGTTGCACCCTACGCTGCGCCTTCTGCCCGAAACATAATGGCAGTAAACAAATTCACGAGTAT
CAATTGGCATTGACCCACCAGCCCAAGCCAGAGGAAATCATCCCGCTGTTAGGTAAGGTGGAAGACTTTGAGGAATATGT
GTTCTGCGGTTACGGTGAACCGACGATGAATCTGCCGACCCTGCTGGCCGTAGCCAAGGAAATCAAACGCCGTGGCGGCC
GTGTGCGGGTCAATACCGATGGGTTAGGCAACCTAGTTCACAGGCGCAACATTCTGCCCGAGTTAGCGGAGTGCGTGGAT
GGATTATCCATTTCCCTCAACGCCGACAATGAGGCCGCCTATAACCAACATTGCCGCCCAAAACTGGCGGGCTCCTACGC
TGCAGTGAATGCCTTTATCGCCCTCGCCCCCCACTATATTGAGCGCGTTCAAGTCTCGGCGATTGAGGGATTAGAAGGGG
TCGACATCGATCTTTGCCGCGAACAAGTACTCGCCTCGGGCTGCGAGTTTAAGCACAGAGTGCTGGGCGCGCTCGGTTAA

Upstream 100 bases:

>100_bases
ACGAGTAAAGCGCGTTGTGCGATCTAGGTGGCAGTTATCAAGGATCGCATTCGTTACACTCAACCTAAGTGACCGCCAAG
ATGCCAATAAAGTCGATAGT

Downstream 100 bases:

>100_bases
TAGATCCCCAGAATAGCCGTTGGGTTGATGCATTGCTCGGCATAACAGAGTCGCCGAGCAACTTGCCACTGTCGTAACAT
TTCATTCGTGTTAACATAGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Hydrolase TatD Family; TatD Family Hydrolase; Mg-Dependent DNAse; Metallo Cofactor Biosynthesis Protein; Radical SAM-Superfamily Protein; Deoxyribonuclease TatD Family; TatD Family Deoxyribonuclease; Radical SAM Superfamily Protein; Radical SAM Family Protein; Radical SAM; TatD-Related DeoxyribonucleaseRadical SAM Family Protein; Radical SAM Family Fe-S Protein

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKTDRMPNSHSAPIPPAPLKATETLANGNTTAEVCTNETCANETLVYDIRRSRYLNITGRCTLRCAFCPKHNGSKQIHEY
QLALTHQPKPEEIIPLLGKVEDFEEYVFCGYGEPTMNLPTLLAVAKEIKRRGGRVRVNTDGLGNLVHRRNILPELAECVD
GLSISLNADNEAAYNQHCRPKLAGSYAAVNAFIALAPHYIERVQVSAIEGLEGVDIDLCREQVLASGCEFKHRVLGALG

Sequences:

>Translated_239_residues
MKTDRMPNSHSAPIPPAPLKATETLANGNTTAEVCTNETCANETLVYDIRRSRYLNITGRCTLRCAFCPKHNGSKQIHEY
QLALTHQPKPEEIIPLLGKVEDFEEYVFCGYGEPTMNLPTLLAVAKEIKRRGGRVRVNTDGLGNLVHRRNILPELAECVD
GLSISLNADNEAAYNQHCRPKLAGSYAAVNAFIALAPHYIERVQVSAIEGLEGVDIDLCREQVLASGCEFKHRVLGALG
>Mature_239_residues
MKTDRMPNSHSAPIPPAPLKATETLANGNTTAEVCTNETCANETLVYDIRRSRYLNITGRCTLRCAFCPKHNGSKQIHEY
QLALTHQPKPEEIIPLLGKVEDFEEYVFCGYGEPTMNLPTLLAVAKEIKRRGGRVRVNTDGLGNLVHRRNILPELAECVD
GLSISLNADNEAAYNQHCRPKLAGSYAAVNAFIALAPHYIERVQVSAIEGLEGVDIDLCREQVLASGCEFKHRVLGALG

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26296; Mature: 26296

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTDRMPNSHSAPIPPAPLKATETLANGNTTAEVCTNETCANETLVYDIRRSRYLNITGR
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCEEEEEECC
CTLRCAFCPKHNGSKQIHEYQLALTHQPKPEEIIPLLGKVEDFEEYVFCGYGEPTMNLPT
EEEEEEECCCCCCCCHHEEEEEEECCCCCCHHHHHHHCCHHHHHHEEEECCCCCCCCHHH
LLAVAKEIKRRGGRVRVNTDGLGNLVHRRNILPELAECVDGLSISLNADNEAAYNQHCRP
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
KLAGSYAAVNAFIALAPHYIERVQVSAIEGLEGVDIDLCREQVLASGCEFKHRVLGALG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKTDRMPNSHSAPIPPAPLKATETLANGNTTAEVCTNETCANETLVYDIRRSRYLNITGR
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCEEEEEECC
CTLRCAFCPKHNGSKQIHEYQLALTHQPKPEEIIPLLGKVEDFEEYVFCGYGEPTMNLPT
EEEEEEECCCCCCCCHHEEEEEEECCCCCCHHHHHHHCCHHHHHHEEEECCCCCCCCHHH
LLAVAKEIKRRGGRVRVNTDGLGNLVHRRNILPELAECVDGLSISLNADNEAAYNQHCRP
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
KLAGSYAAVNAFIALAPHYIERVQVSAIEGLEGVDIDLCREQVLASGCEFKHRVLGALG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA